Publications

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Journal Articles
Dupont CL, Rusch DB, Yooseph S, Lombardo M-J, R Richter A, Valas R, Novotny M, Yee-Greenbaum J, Selengut JD, Haft DH et al..  2012.  Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage.. ISME J. 6(6):1186-99.
Dupont CL, Rusch DB, Yooseph S, Lombardo M-J, R. Richter A, Valas R, Novotny M, Yee-Greenbaum J, Selengut J., Haft DH et al..  2012.  Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage. The ISME journalThe ISME journal. 6
Chen PE, Cook C, Stewart AC, Nagarajan N, Sommer DD, Pop M., Thomason B, Thomason MPK, Lentz S, Nolan N et al..  2010.  Genomic characterization of the Yersinia genus. Genome BiologyGenome Biology. 11
Chen PE, Cook C, Stewart AC, Nagarajan N, Sommer DD, Pop M., Thomason B, Thomason MPK, Lentz S, Nolan N et al..  2010.  Genomic characterization of the Yersinia genus. Genome BiologyGenome Biology. 11
Chen PE, Cook C, Stewart AC, Nagarajan N, Sommer DD, Pop M., Thomason B, Thomason MPK, Lentz S, Nolan N et al..  2010.  Genomic characterization of the Yersinia genus. Genome BiologyGenome Biology. 11
Chen PE, Cook C, Stewart AC, Nagarajan N, Sommer DD, Pop M., Thomason B, Thomason MPK, Lentz S, Nolan N et al..  2010.  Genomic characterization of the Yersinia genus. Genome BiologyGenome Biology. 11
Taviani E, Spagnoletti M, Ceccarelli D, Haley BJ, Hasan NA, Chen A, Colombo MM, Huq A, Colwell RR.  2012.  Genomic analysis of ICEVchBan8: An atypical genetic element in Vibrio cholerae. FEBS LettersFEBS Letters.
Vishnoi A, Sethupathy P, Simola D, Plotkin JB, Hannenhalli S.  2011.  Genome-Wide Survey of Natural Selection on Functional, Structural, and Network Properties of Polymorphic Sites in Saccharomyces Paradoxus. Molecular Biology and EvolutionMol Biol EvolMolecular Biology and EvolutionMol Biol Evol. 28
Vishnoi A, Sethupathy P, Simola D, Plotkin JB, Hannenhalli S.  2011.  Genome-Wide Survey of Natural Selection on Functional, Structural, and Network Properties of Polymorphic Sites in Saccharomyces Paradoxus. Molecular Biology and EvolutionMol Biol EvolMolecular Biology and EvolutionMol Biol Evol. 28
Severance S, Rajagopal A, Rao AU, Cerqueira GC, Mitreva M, El-Sayed NM, Krause M, Hamza I.  2010.  Genome-wide analysis reveals novel genes essential for heme homeostasis in Caenorhabditis elegans.. PLoS Genet. 6(7):e1001044.
Nagarajan N., Navajas-Pérez R., Pop M., Alam M., Ming R., Paterson A.H, Salzberg S.L.  2008.  Genome-wide analysis of repetitive elements in papaya. Tropical Plant BiologyTropical Plant Biology. 1
Sethupathy P, Giang H, Plotkin JB, Hannenhalli S.  2008.  Genome-Wide Analysis of Natural Selection on Human Cis-Elements. PLoS ONEPLoS ONEPLoS ONEPLoS ONE. 3
Lewinski M.K, Bisgrove D., Shinn P., Chen H., Hoffmann C., Hannenhalli S, Verdin E., Berry C.C, Ecker J.R, Bushman F.D.  2005.  Genome-Wide Analysis of Chromosomal Features Repressing Human Immunodeficiency Virus Transcription. Journal of VirologyJ. Virol.Journal of VirologyJ. Virol.. 79
Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S et al..  2002.  Genome sequence of the human malaria parasite Plasmodium falciparum. NatureNature. 419
Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S et al..  2002.  Genome sequence of the human malaria parasite Plasmodium falciparum. NatureNature. 419
Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S et al..  2002.  Genome sequence of the human malaria parasite Plasmodium falciparum. NatureNature. 419
Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S et al..  2002.  Genome sequence of the human malaria parasite Plasmodium falciparum. NatureNature. 419
Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S et al..  2002.  Genome sequence of the human malaria parasite Plasmodium falciparum. NatureNature. 419
Heidelberg JF, Seshadri R, Haveman SA, Hemme CL, Paulsen IT, Kolonay JF, Eisen JA, Ward N, Methe B, Brinkac LM et al..  2004.  The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. Nature biotechnologyNature biotechnology. 22
Heidelberg JF, Seshadri R, Haveman SA, Hemme CL, Paulsen IT, Kolonay JF, Eisen JA, Ward N, Methe B, Brinkac LM et al..  2004.  The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. Nature biotechnologyNature biotechnology. 22
Heidelberg JF, Seshadri R, Haveman SA, Hemme CL, Paulsen IT, Kolonay JF, Eisen JA, Ward N, Methe B, Brinkac LM et al..  2004.  The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. Nature biotechnologyNature biotechnology. 22
Moran MAnn, Buchan A, González JM, Heidelberg JF, Whitman WB, Kiene RP, Henriksen JR, King GM, Belas R, Fuqua C et al..  2004.  Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. NatureNature. 432
Moran MAnn, Buchan A, González JM, Heidelberg JF, Whitman WB, Kiene RP, Henriksen JR, King GM, Belas R, Fuqua C et al..  2004.  Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. NatureNature. 432
Moran MAnn, Buchan A, González JM, Heidelberg JF, Whitman WB, Kiene RP, Henriksen JR, King GM, Belas R, Fuqua C et al..  2004.  Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. NatureNature. 432
Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer SE, Li PW, Hoskins RA, Galle RF et al..  2000.  The genome sequence of Drosophila melanogaster.. Science. 287(5461):2185-95.

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