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Fermin D.R, Barac A., Lee S., Polster S.P, Hannenhalli S, Bergemann T.L, Grindle S., Dyke D.B, Pagani F., Miller L.W et al..  2008.  Sex and age dimorphism of myocardial gene expression in nonischemic human heart failure. Circulation: Cardiovascular GeneticsCirculation: Cardiovascular Genetics. 1
Fermin D.R, Barac A., Lee S., Polster S.P, Hannenhalli S, Bergemann T.L, Grindle S., Dyke D.B, Pagani F., Miller L.W et al..  2008.  Sex and age dimorphism of myocardial gene expression in nonischemic human heart failure. Circulation: Cardiovascular GeneticsCirculation: Cardiovascular Genetics. 1
Salzberg SL, Hotopp JCD, Delcher AL, Pop M., Smith DR, Eisen MB, Nelson WC.  2005.  Serendipitous discovery of Wolbachia genomes in multiple Drosophila species. Genome BiologyGenome Biology. 6
Nagarajan N., Pop M..  2010.  Sequencing and genome assembly using next-generation technologies. Methods Mol. BiolMethods Mol. Biol. 673
Gardner MJ, Shallom SJ, Carlton JM, Salzberg SL, Nene V, Shoaibi A, Ciecko A, Lynn J, Rizzo M, Weaver B et al..  2002.  Sequence of Plasmodium falciparum chromosomes 2, 10, 11 and 14. NatureNature. 419
Gardner MJ, Shallom SJ, Carlton JM, Salzberg SL, Nene V, Shoaibi A, Ciecko A, Lynn J, Rizzo M, Weaver B et al..  2002.  Sequence of Plasmodium falciparum chromosomes 2, 10, 11 and 14. NatureNature. 419
Gardner MJ, Shallom SJ, Carlton JM, Salzberg SL, Nene V, Shoaibi A, Ciecko A, Lynn J, Rizzo M, Weaver B et al..  2002.  Sequence of Plasmodium falciparum chromosomes 2, 10, 11 and 14. NatureNature. 419
Gardner MJ, Shallom SJ, Carlton JM, Salzberg SL, Nene V, Shoaibi A, Ciecko A, Lynn J, Rizzo M, Weaver B et al..  2002.  Sequence of Plasmodium falciparum chromosomes 2, 10, 11 and 14. NatureNature. 419
Pepling M, Mount SM.  1990.  Sequence of a cDNA from the Drosophila melanogaster white gene.. Nucleic Acids Res. 18(6):1633.
Nagarajan N, Pop M..  2013.  Sequence assembly demystified. Nature Reviews GeneticsNature Reviews Genetics. 14
el-Sayed NMA, Ghedin E, Song J, MacLeod A, Bringaud F, Larkin C, Wanless D, Peterson J, Hou L, Taylor S et al..  2003.  The sequence and analysis of Trypanosoma brucei chromosome II.. Nucleic Acids Res. 31(16):4856-63.
el-Sayed NMA, Ghedin E, Song J, MacLeod A, Bringaud F, Larkin C, Wanless D, Peterson J, Hou L, Taylor S et al..  2003.  The sequence and analysis of Trypanosoma brucei chromosome II.. Nucleic Acids Res. 31(16):4856-63.
El‐Sayed NM, Ghedin E., Song J., MacLeod A., Bringaud F., Larkin C., Wanless D., Peterson J., Hou L., Taylor S. et al..  2003.  The sequence and analysis of Trypanosoma brucei chromosome II. Nucleic acids researchNucleic Acids Research. 31
Langmead B, Schatz MC, Jimmy L, Pop M., Salzberg SL.  2009.  Searching for SNPs with cloud computing. Genome BiologyGenome Biology. 10
Waisberg M, Lobo FP, Cerqueira GC, Passos LKJ, Carvalho OS, El-Sayed NM, Franco GR.  2008.  Schistosoma mansoni: Microarray analysis of gene expression induced by host sex.. Exp Parasitol. 120(4):357-63.
Ghurye J, Pop M, Koren S, Chin C-S.  2016.  Scaffolding of long read assemblies using long range contact information.
Nagarajan N, Read TD, Pop M..  2008.  Scaffolding and Validation of Bacterial Genome Assemblies Using Optical Restriction Maps. BioinformaticsBioinformaticsBioinformaticsBioinformatics. 24
Kim Y, Patro R, Ip CYiu, O'Leary DP, Anishkin A, Sukharev S, Varshney A.  2009.  Salient Frame Detection for Molecular Dynamics Simulations. Scientific VisualizationScientific Visualization.
Patro R., Ip C.Y, Varshney A, Hagen H..  2010.  Saliency Guided Summarization of Molecular Dynamics Simulations. Scientific Visualization: Advanced ConceptsScientific Visualization: Advanced Concepts. 1
Patro R, Mount SM, Kingsford C.  2014.  Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms.. Nat Biotechnol. 32(5):462-4.
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Bringaud F, Ghedin E, El‐Sayed NM, Papadopoulou B.  2008.  Role of transposable elements in trypanosomatids. Microbes and InfectionMicrobes and Infection. 10
Chung M, Krueger J, Pop M.  2015.  Robust Parameter Estimation for Biological Systems: A Study on the Dynamics of Microbial Communities. arXiv preprint arXiv:1509.06926.
Maximo A., Patro R., Varshney A, Farias R..  2011.  A robust and rotationally invariant local surface descriptor with applications to non-local mesh processing. Graphical ModelsGraphical Models. 73
Peculis BA, Mount SM.  1996.  Ribosomal RNA: small nucleolar RNAs make their mark.. Curr Biol. 6(11):1413-5.
Hannenhalli S, Pevzner P.A.  1995.  Reversals do not cut long strips.

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