Publications
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2011. Population Dynamics of Vibrio Cholerae and Cholera in the Bangladesh Sundarbans: Role of Zooplankton Diversity. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol..
1996. Positional sequencing by hybridization. Computer applications in the biosciences : CABIOSComputer applications in the biosciences : CABIOS. 12
2009. A practical algorithm for finding maximal exact matches in large sequence datasets using sparse suffix arrays.. Bioinformatics. 25(13):1609-16.
2014. Predicting cancer-specific vulnerability via data-driven detection of synthetic lethality.. Cell. 158(5):1199-209.
2014. Predicting cancer-specific vulnerability via data-driven detection of synthetic lethality.. Cell. 158(5):1199-209.
2011. Predicting selective drug targets in cancer through metabolic networks.. Mol Syst Biol. 7:501.
2005. Promoter architecture and response to a positive regulator of archaeal transcription. Molecular MicrobiologyMolecular Microbiology. 56
2011. ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process.. BMC Bioinformatics. 12:434.
2011. ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process. BMC bioinformaticsBMC Bioinformatics. 12
2009. Protein quantification across hundreds of experimental conditions.. Proc Natl Acad Sci U S A. 106(37):15544-8.
2002. Purification and properties of the extracellular lipase, LipA, of Acinetobacter sp. RAG‐1. European Journal of BiochemistryEuropean Journal of Biochemistry. 269
2002. Purification and properties of the extracellular lipase, LipA, of Acinetobacter sp. RAG‐1. European Journal of BiochemistryEuropean Journal of Biochemistry. 269
2012. Quantitative measurement of allele-specific protein expression in a diploid yeast hybrid by LC-MS. Molecular Systems Biology. 8
2003. Reduction of Cholera in Bangladeshi Villages by Simple Filtration. Proceedings of the National Academy of SciencesPNASProceedings of the National Academy of SciencesPNAS. 100
2003. Reduction of Cholera in Bangladeshi Villages by Simple Filtration. Proceedings of the National Academy of SciencesPNASProceedings of the National Academy of SciencesPNAS. 100
2001. Relating amino acid sequence to phenotype: analysis of peptide-binding data. BiometricsBiometrics. 57
2011. Repetitive DNA and next-generation sequencing: computational challenges and solutions. Nature Reviews Genetics.
2008. Resolving arthropod phylogeny: exploring phylogenetic signal within 41 kb of protein-coding nuclear gene sequence. Syst BiolSyst Biol. 57
2008. Resolving arthropod phylogeny: exploring phylogenetic signal within 41 kb of protein-coding nuclear gene sequence. Syst BiolSyst Biol. 57
2008. Resolving arthropod phylogeny: exploring phylogenetic signal within 41 kb of protein-coding nuclear gene sequence. Syst BiolSyst Biol. 57
2006. Retroviral DNA integration: viral and cellular determinants of target-site selection. PLoS pathogensPLoS pathogens. 2
2009. Revealing biological modules via graph summarization. Journal of Computational BiologyJournal of Computational Biology. 16