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2008

White JRobert, Roberts M, Yorke JA, Pop M.. 2008. Figaro: A Novel Statistical Method for Vector Sequence Removal. BioinformaticsBioinformaticsBioinformaticsBioinformatics. 24

Phillippy AM, Schatz MC, Pop M.. 2008. Genome assembly forensics: finding the elusive mis-assembly. Genome BiologyGenome Biology. 9

Phillippy AM, Schatz MC, Pop M.. 2008. Genome assembly forensics: finding the elusive mis-assembly. Genome BiologyGenome Biology. 9

Sethupathy P, Giang H, Plotkin JB, Hannenhalli S. 2008. Genome-Wide Analysis of Natural Selection on Human Cis-Elements. PLoS ONEPLoS ONEPLoS ONEPLoS ONE. 3

Nagarajan N., Navajas-Pérez R., Pop M., Alam M., Ming R., Paterson A.H, Salzberg S.L. 2008. Genome-wide analysis of repetitive elements in papaya. Tropical Plant BiologyTropical Plant Biology. 1

Nagarajan N., Navajas-Pérez R., Pop M., Alam M., Ming R., Paterson A.H, Salzberg S.L. 2008. Genome-wide analysis of repetitive elements in papaya. Tropical Plant BiologyTropical Plant Biology. 1

Pruzzo C, Vezzulli L, Colwell RR. 2008. Global impact of Vibrio cholerae interactions with chitin. Environmental MicrobiologyEnvironmental Microbiology. 10

Wan L.B, Pan H., Hannenhalli S, Cheng Y., Ma J., Fedoriw A., Lobanenkov V., Latham K.E, Schultz R.M, Bartolomei M.S. 2008. Maternal depletion of CTCF reveals multiple functions during oocyte and preimplantation embryo development. DevelopmentDevelopment. 135

Field D, Garrity G, Gray T, Morrison N, Selengut J., Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV et al.. 2008. The minimum information about a genome sequence (MIGS) specification. Nature biotechnologyNature biotechnology. 26

Field D, Garrity G, Gray T, Morrison N, Selengut J., Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV et al.. 2008. The minimum information about a genome sequence (MIGS) specification. Nature biotechnologyNature biotechnology. 26

Bringaud F, Ghedin E, El‐Sayed NM, Papadopoulou B. 2008. Role of transposable elements in trypanosomatids. Microbes and InfectionMicrobes and Infection. 10

Nagarajan N, Read TD, Pop M.. 2008. Scaffolding and Validation of Bacterial Genome Assemblies Using Optical Restriction Maps. BioinformaticsBioinformaticsBioinformaticsBioinformatics. 24

Waisberg M, Lobo FP, Cerqueira GC, Passos LKJ, Carvalho OS, El-Sayed NM, Franco GR. 2008. Schistosoma mansoni: Microarray analysis of gene expression induced by host sex.. Exp Parasitol. 120(4):357-63.

Fermin D.R, Barac A., Lee S., Polster S.P, Hannenhalli S, Bergemann T.L, Grindle S., Dyke D.B, Pagani F., Miller L.W et al.. 2008. Sex and age dimorphism of myocardial gene expression in nonischemic human heart failure. Circulation: Cardiovascular GeneticsCirculation: Cardiovascular Genetics. 1

Fermin D.R, Barac A., Lee S., Polster S.P, Hannenhalli S, Bergemann T.L, Grindle S., Dyke D.B, Pagani F., Miller L.W et al.. 2008. Sex and age dimorphism of myocardial gene expression in nonischemic human heart failure. Circulation: Cardiovascular GeneticsCirculation: Cardiovascular Genetics. 1

2007

Darling AE, Treangen T, Messeguer X, Perna NT. 2007. Analyzing patterns of microbial evolution using the mauve genome alignment system. Comparative Genomics. :135–152.

Hammel M, Sfyroera G, Pyrpassopoulos S, Ricklin D, Ramyar KX, Pop M., Jin Z, Lambris JD, Geisbrecht BV. 2007. Characterization of Ehp, a Secreted Complement Inhibitory Protein from Staphylococcus aureus. Journal of Biological ChemistryJournal of Biological Chemistry. 282

Hammel M, Sfyroera G, Pyrpassopoulos S, Ricklin D, Ramyar KX, Pop M., Jin Z, Lambris JD, Geisbrecht BV. 2007. Characterization of Ehp, a Secreted Complement Inhibitory Protein from Staphylococcus aureus. Journal of Biological ChemistryJournal of Biological Chemistry. 282

Pertea M, Mount SM, Salzberg SL. 2007. A computational survey of candidate exonic splicing enhancer motifs in the model plant Arabidopsis thaliana.. BMC Bioinformatics. 8:159.

Colwell RR, Peeters J.. 2007. Creating a nationwide wireless detection sensor network for chemical, biological and radiological threats. Gentag White PaperGentag White Paper.

Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al.. 2007. Evolution of genes and genomes on the Drosophila phylogeny. NatureNature. 450

Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al.. 2007. Evolution of genes and genomes on the Drosophila phylogeny. NatureNature. 450

Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al.. 2007. Evolution of genes and genomes on the Drosophila phylogeny. NatureNature. 450

Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al.. 2007. Evolution of genes and genomes on the Drosophila phylogeny. NatureNature. 450

Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al.. 2007. Evolution of genes and genomes on the Drosophila phylogeny. NatureNature. 450

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