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2006. An interaction-dependent model for transcription factor binding. Systems Biology and Regulatory GenomicsSystems Biology and Regulatory Genomics.
2012. InterPro in 2011: new developments in the family and domain prediction database. Nucleic acids researchNucleic Acids Research. 40
2012. InterPro in 2011: new developments in the family and domain prediction database.. Nucleic Acids Res. 40(Database issue):D306-12.
2009. InterPro: the integrative protein signature database.. Nucleic Acids Res. 37(Database issue):D211-5.
2009. InterPro: the integrative protein signature database. Nucleic acids researchNucleic Acids Research. 37
2013. Intrinsically disordered proteins and conformational noise: Implications in cancer. Cell CycleCell Cycle. 12
2006. Invited Talk: Deciphering Gene Regulatory Networks by in silico approaches. 6th International Workshop on Data Mining in Bioinformatics (BIOKDD06)6th International Workshop on Data Mining in Bioinformatics (BIOKDD06).
2012. Irreconcilable differences: divorcing geographic mutation and recombination rates within a global MRSA clone. Genome Biology. 13
2016. A joint analysis of transcriptomic and metabolomic data uncovers enhanced enzyme-metabolite coupling in breast cancer.. Sci Rep. 6:29662.
2013. A large-scale, higher-level, molecular phylogenetic study of the insect order Lepidoptera (moths and butterflies). PLoS OnePLoS One. 8
2000. Ligand-Receptor Pairing Via Tree Comparison. Journal of Computational BiologyJournal of Computational Biology. 7
1997. Local rules for protein folding on a triangular lattice and generalized hydrophobicity in the HP model. Journal of Computational BiologyJournal of Computational Biology. 4
1995. Localization of sequences required for size-specific splicing of a small Drosophila intron in vitro.. J Mol Biol. 253(3):426-37.
2016. Longitudinal analysis of the lung microbiota of cynomolgous macaques during long-term SHIV infection. Microbiome. 4320384718719152130282021211818418719223326578105723(158836212108125732558101131110121arXiv:1006.3316)
2011. Long-term effects of ocean warming on the prokaryotic community: evidence from the vibrios. The ISME JournalThe ISME journal. 6
2005. Magic bullets and golden rules: data sampling in molecular phylogenetics. Zoology (Jena)Zoology (Jena). 108
2006. A mammalian promoter model links cis elements to genetic networks. Biochemical and Biophysical Research CommunicationsBiochemical and Biophysical Research Communications. 347
1989. Management of an enlarging aortic aneurysm in the presence of radiation induced retroperitoneal fibrosis.. J Cardiovasc Surg (Torino). 30(2):233-5.
2016. Mash: fast genome and metagenome distance estimation using MinHash. Genome Biology. (1Suppl 19)
2008. Maternal depletion of CTCF reveals multiple functions during oocyte and preimplantation embryo development. DevelopmentDevelopment. 135
2006. MCMC Data Association and Sparse Factorization Updating for Real Time Multitarget Tracking with Merged and Multiple Measurements. IEEE Transactions on Pattern Analysis and Machine Intelligence. 28(12):1960-1972.