Publications
2004. Comparative Genome Assembly. Briefings in BioinformaticsBrief BioinformBriefings in BioinformaticsBrief Bioinform. 5
2004. Using the TIGR assembler in shotgun sequencing projects. METHODS IN MOLECULAR BIOLOGY-CLIFTON THEN TOTOWA-METHODS IN MOLECULAR BIOLOGY-CLIFTON THEN TOTOWA-. 255
2008. Bioinformatics challenges of new sequencing technology. Trends in GeneticsTrends in Genetics. 24
2015. Computational challenges in microbiome research. 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).
2012. We are what we eat: how the diet of infants affects their gut microbiome. Genome BiologyGenome Biology. 13
2015. Algorithms in Bioinformatics: 15th International Workshop, WABI 2015. Lecture Notes in Bioinformatics. :328.
2000. A Case for Evolutionary Genomics and the Comprehensive Examination of Sequence Biodiversity. Molecular Biology and EvolutionMol Biol EvolMolecular Biology and EvolutionMol Biol Evol. 17
2014. CTCF binding site sequence differences are associated with unique regulatory and functional trends during embryonic stem cell differentiation. Nucleic Acids ResNucleic Acids ResNucleic Acids Res. 42:774-89.
2012. Irreconcilable differences: divorcing geographic mutation and recombination rates within a global MRSA clone. Genome Biology. 13
2007. A computational survey of candidate exonic splicing enhancer motifs in the model plant Arabidopsis thaliana.. BMC Bioinformatics. 8:159.
2016. Positive and strongly relaxed purifying selection drive the evolution of repeats in proteins. Nature Communications. 7:13570.
1990. Sequence of a cDNA from the Drosophila melanogaster white gene.. Nucleic Acids Res. 18(6):1633.
1995. Genetic enhancement of RNA-processing defects by a dominant mutation in B52, the Drosophila gene for an SR protein splicing factor.. Mol Cell Biol. 15(11):6273-82.
1990. Characterization of enhancer-of-white-apricot in Drosophila melanogaster.. Genetics. 126(4):1061-9.
2004. X-ray crystal structure of the hypothetical phosphotyrosine phosphatase MDP-1 of the haloacid dehalogenase superfamily. BiochemistryBiochemistry. 43
2012. Speeding Up Particle Trajectory Simulations under Moving Force Fields using GPUs. Journal of Computing and Information Science in EngineeringJournal of Computing and Information Science in Engineering.
2010. Saliency Guided Summarization of Molecular Dynamics Simulations. Scientific Visualization: Advanced ConceptsScientific Visualization: Advanced Concepts. 1