Publications
2010. Saliency Guided Summarization of Molecular Dynamics Simulations. Scientific Visualization: Advanced ConceptsScientific Visualization: Advanced Concepts. 1
2014. Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms.. Nat Biotechnol. 32(5):462-4.
2011. MDMap: A system for data-driven layout and exploration of molecular dynamics simulations. Biological Data Visualization (BioVis), 2011 IEEE Symposium on.
2004. X-ray crystal structure of the hypothetical phosphotyrosine phosphatase MDP-1 of the haloacid dehalogenase superfamily. BiochemistryBiochemistry. 43
1995. Genetic enhancement of RNA-processing defects by a dominant mutation in B52, the Drosophila gene for an SR protein splicing factor.. Mol Cell Biol. 15(11):6273-82.
1990. Characterization of enhancer-of-white-apricot in Drosophila melanogaster.. Genetics. 126(4):1061-9.
1990. Sequence of a cDNA from the Drosophila melanogaster white gene.. Nucleic Acids Res. 18(6):1633.
2016. Positive and strongly relaxed purifying selection drive the evolution of repeats in proteins. Nature Communications. 7:13570.
2007. A computational survey of candidate exonic splicing enhancer motifs in the model plant Arabidopsis thaliana.. BMC Bioinformatics. 8:159.
2012. Irreconcilable differences: divorcing geographic mutation and recombination rates within a global MRSA clone. Genome Biology. 13
2014. CTCF binding site sequence differences are associated with unique regulatory and functional trends during embryonic stem cell differentiation. Nucleic Acids ResNucleic Acids ResNucleic Acids Res. 42:774-89.
2000. A Case for Evolutionary Genomics and the Comprehensive Examination of Sequence Biodiversity. Molecular Biology and EvolutionMol Biol EvolMolecular Biology and EvolutionMol Biol Evol. 17
2015. Computational challenges in microbiome research. 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).
2004. Comparative Genome Assembly. Briefings in BioinformaticsBrief BioinformBriefings in BioinformaticsBrief Bioinform. 5
2008. Bioinformatics challenges of new sequencing technology. Trends in GeneticsTrends in Genetics. 24
2015. Algorithms in Bioinformatics: 15th International Workshop, WABI 2015. Lecture Notes in Bioinformatics. :328.
2009. Genome Assembly Reborn: Recent Computational Challenges. Briefings in BioinformaticsBrief BioinformBriefings in BioinformaticsBrief Bioinform. 10
2012. We are what we eat: how the diet of infants affects their gut microbiome. Genome BiologyGenome Biology. 13
2014. Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition.. Genome Biol. 15(6):R76.