Publications
2012. Drosophila Src regulates anisotropic apical surface growth to control epithelial tube size.. Nat Cell Biol. 14(5):518-25.
2003. Genetic consequences of ecological reserve design guidelines: An empirical investigation. Conserv GenetConserv Genet. 4
2004. Section-level relationships of North American ıt Agalinis (Orobanchaceae) based on DNA sequence analysis of three chloroplast gene regions. BMC Evol BiolBMC Evol Biol. 4
2003. Effectiveness of conservation targets in capturing genetic diversity. Conserv BiolConserv Biol. 17
2010. Exploring Biological Network Dynamics with Ensembles of Graph Partitions. Proceedings of the PSB Pacific Symposium on Biocomputing. 15
2009. Finding Biologically Accurate Clusterings in Hierarchical Decompositions Using the Variation of Information. Lecture Notes in Computer Science: Research in Computational Molecular BiologyLecture Notes in Computer Science: Research in Computational Molecular Biology. 5541
2009. Revealing biological modules via graph summarization. Journal of Computational BiologyJournal of Computational Biology. 16
2010. The power of protein interaction networks for associating genes with diseases. BioinformaticsBioinformatics. 26
2010. Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of Information. Journal of Computational BiologyJournal of Computational Biology. 17
2012. Role of Shrimp Chitin in the Ecology of Toxigenic Vibrio cholerae and Cholera Transmission. Frontiers in MicrobiologyFront MicrobiolFrontiers in MicrobiologyFront Microbiol. 2
2003. Sex-lethal splicing autoregulation in vivo: interactions between SEX-LETHAL, the U1 snRNP and U2AF underlie male exon skipping.. Development. 130(3):463-71.
2009. Parametric Complexity of Sequence Assembly: Theory and Applications to Next Generation Sequencing. Journal of Computational BiologyJournal of Computational Biology. 16
2010. Sequencing and genome assembly using next-generation technologies. Methods Mol. BiolMethods Mol. Biol. 673
2008. Uncovering Genomic Reassortments among Influenza Strains by Enumerating Maximal Bicliques. IEEE International Conference on Bioinformatics and Biomedicine, 2008. BIBM '08.
2008. Scaffolding and Validation of Bacterial Genome Assemblies Using Optical Restriction Maps. BioinformaticsBioinformaticsBioinformaticsBioinformatics. 24
2008. Genome-wide analysis of repetitive elements in papaya. Tropical Plant BiologyTropical Plant Biology. 1
2010. Finishing genomes with limited resources: lessons from an ensemble of microbial genomes. BMC GenomicsBMC Genomics. 11
2007. Genome sequence and identification of candidate vaccine antigens from the animal pathogen Dichelobacter nodosus. Nature biotechnologyNature biotechnology. 25
2003. Necessity is the mother of invention: a simple grid computing system using commodity tools. J Parallel Distr ComJ Parallel Distr Com. 63
2007. Genome sequence and identification of candidate vaccine antigens from the animal pathogen Dichelobacter nodosus.. Nat Biotechnol. 25(5):569-75.
2008. Expanding the reach of Grid computing: combining Globus- and BOINC-based systems. Grids for Bioinformatics and Computational BiologyGrids for Bioinformatics and Computational Biology.