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Pop M., Salzberg S.L, Shumway M..  2002.  Genome sequence assembly: Algorithms and issues. ComputerComputer. 35
Pop M., Kosack DS, Salzberg SL.  2004.  Hierarchical Scaffolding With Bambus. Genome ResearchGenome Research. 14
Pop M., Kosack D..  2004.  Using the TIGR assembler in shotgun sequencing projects. METHODS IN MOLECULAR BIOLOGY-CLIFTON THEN TOTOWA-METHODS IN MOLECULAR BIOLOGY-CLIFTON THEN TOTOWA-. 255
Pop M., Duncan C, Barequet G, Goodrich M, Huang W, Kumar S.  2001.  Efficient perspective-accurate silhouette computation and applications. Proceedings of the seventeenth annual symposium on Computational geometry.
Pop M., Adviser-Kosaraju S.R.  2000.  Exploiting coherence in spatial database queries.
Pop M..  2004.  Shotgun Sequence Assembly. Advances in ComputersAdvances in Computers. Volume 60
Pop M, Touzet H.  2015.  Algorithms in Bioinformatics: 15th International Workshop, WABI 2015. Lecture Notes in Bioinformatics. :328.
Pop M., Phillippy A, Delcher AL, Salzberg SL.  2004.  Comparative Genome Assembly. Briefings in BioinformaticsBrief BioinformBriefings in BioinformaticsBrief Bioinform. 5
Pop M, Walker AW, Paulson J, Lindsay B, Antonio M, M Hossain A, Oundo J, Tamboura B, Mai V, Astrovskaya I et al..  2014.  Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition.. Genome Biol. 15(6):R76.
Pop M., Salzberg SL.  2008.  Bioinformatics challenges of new sequencing technology. Trends in GeneticsTrends in Genetics. 24
Pollock DD, Eisen JA, Doggett NA, Cummings MP.  2000.  A Case for Evolutionary Genomics and the Comprehensive Examination of Sequence Biodiversity. Molecular Biology and EvolutionMol Biol EvolMolecular Biology and EvolutionMol Biol Evol. 17
Plasschaert R.N, Vigneau S., Tempera I., Gupta R., Maksimoska J., Everett L., Davuluri R., Mamorstein R., Lieberman P.M, Schultz D. et al..  2014.  CTCF binding site sequence differences are associated with unique regulatory and functional trends during embryonic stem cell differentiation. Nucleic Acids ResNucleic Acids ResNucleic Acids Res. 42:774-89.
Phillippy A, Treangen T.  2012.  Irreconcilable differences: divorcing geographic mutation and recombination rates within a global MRSA clone. Genome Biology. 13
Phillippy AM, Schatz MC, Pop M..  2008.  Genome assembly forensics: finding the elusive mis-assembly. Genome BiologyGenome Biology. 9
Pertea M, Mount SM, Salzberg SL.  2007.  A computational survey of candidate exonic splicing enhancer motifs in the model plant Arabidopsis thaliana.. BMC Bioinformatics. 8:159.
Persi E, Wolf YI, Koonin EV.  2016.  Positive and strongly relaxed purifying selection drive the evolution of repeats in proteins. Nature Communications. 7:13570.
Pepling M, Mount SM.  1990.  Sequence of a cDNA from the Drosophila melanogaster white gene.. Nucleic Acids Res. 18(6):1633.
Peng X, Mount SM.  1995.  Genetic enhancement of RNA-processing defects by a dominant mutation in B52, the Drosophila gene for an SR protein splicing factor.. Mol Cell Biol. 15(11):6273-82.
Peng XB, Mount SM.  1990.  Characterization of enhancer-of-white-apricot in Drosophila melanogaster.. Genetics. 126(4):1061-9.
Peisach E, Selengut J., Dunaway-Mariano D, Allen KN.  2004.  X-ray crystal structure of the hypothetical phosphotyrosine phosphatase MDP-1 of the haloacid dehalogenase superfamily. BiochemistryBiochemistry. 43
Peculis BA, Mount SM.  1996.  Ribosomal RNA: small nucleolar RNAs make their mark.. Curr Biol. 6(11):1413-5.
Paulson JN, Bravo éctorCorrada, Pop M.  2014.  Reply to: "A fair comparison". Nature Methods. 11(4):359-360.
Paulson JN, O. Stine C, Bravo HCorrada, Pop M..  2013.  Differential abundance analysis for microbial marker-gene surveys. Nature methods. 10
Patro R., Ip CYiu, Bista S., Varshney A.  2011.  Social Snapshot: A System for Temporally Coupled Social Photography. Computer Graphics and Applications, IEEEComputer Graphics and Applications, IEEE. 31
Patro R., Ip C.Y, Varshney A, Hagen H..  2010.  Saliency Guided Summarization of Molecular Dynamics Simulations. Scientific Visualization: Advanced ConceptsScientific Visualization: Advanced Concepts. 1

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