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Souza RT, Santos MRM, Lima FM, El‐Sayed NM, Myler PJ, Ruiz JC, da Silveira JFranco.  2007.  New Trypanosoma cruzi Repeated Element That Shows Site Specificity for Insertion. Eukaryotic CellEukaryotic Cell. 6
Souza C.P, Almeida B.C, Colwell RR, Rivera I.NG.  2011.  The Importance of Chitin in the Marine Environment. Marine BiotechnologyMarine Biotechnology.
Sommer D., Delcher A., Salzberg S., Pop M..  2007.  Minimus: a fast, lightweight genome assembler. BMC bioinformaticsBMC Bioinformatics. 8
Sohn J.C, Regier J.C, Mitter C., Davis D., Landry J.F, Zwick A., Cummings MP.  2013.  A molecular phylogeny for Yponomeutoidea (Insecta, Lepidoptera, Ditrysia) and its implications for classification, biogeography and\ the evolution of host plant use. PLoS One.
Snellman EA, Sullivan ER, Colwell RR.  2002.  Purification and properties of the extracellular lipase, LipA, of Acinetobacter sp. RAG‐1. European Journal of BiochemistryEuropean Journal of Biochemistry. 269
Snellman E.A, Colwell RR.  2008.  Transesterification activity of a novel lipase from Acinetobacter venetianus RAG-1. Antonie van LeeuwenhoekAntonie van Leeuwenhoek. 94
Snellman E.A, Colwell RR.  2004.  Acinetobacter lipases: molecular biology, biochemical properties and biotechnological potential. Journal of industrial microbiology & biotechnologyJournal of industrial microbiology & biotechnology. 31
Smircich P, Forteza D, El-Sayed NM, Garat B.  2013.  Genomic analysis of sequence-dependent DNA curvature in Leishmania.. PLoS One. 8(4):e63068.
Singh LN, Hannenhalli S.  2010.  Correlated Changes Between Regulatory Cis Elements and Condition-Specific Expression in Paralogous Gene Families. Nucleic Acids ResearchNucl. Acids Res.Nucleic Acids ResearchNucl. Acids Res.. 38
Singh LN, Hannenhalli S.  2008.  Functional Diversification of Paralogous Transcription Factors via Divergence in DNA Binding Site Motif and in Expression. PLoS ONEPLoS ONEPLoS ONEPLoS ONE. 3
Singh L.N, Wang L.S, Hannenhalli S.  2007.  TREMOR—a tool for retrieving transcriptional modules by incorporating motif covariance. Nucleic acids researchNucleic Acids Research. 35
Simpson J.T, Pop M..  2015.  The Theory and Practice of Genome Sequence Assembly. Annu Rev Genomics Hum GenetAnnu Rev Genomics Hum Genet. 16:153-72.
Simola D.F, Dalva M., Hannenhalli S, Liebhaber S., Bucan M., Ungar L..  2005.  Post-transcriptional Control in Mammalian Dendrites.
Simola D.F, Bucan M., Dalva M., Hannenhalli S, Liebhaber S., Ungar L..  2005.  Bioinformatic Prediction of mRNA Targets of the Fragile X Mental Retardation Protein.
Simões MC, Lee J, Djikeng A, Cerqueira GC, Zerlotini A, da Silva-Pereira RA, Dalby AR, LoVerde P, El-Sayed NM, Oliveira G.  2011.  Identification of Schistosoma mansoni microRNAs.. BMC Genomics. 12:47.
Shneiderman B, Colwell RR, Diamond S, Greenhalgh P, Wulf W.  2007.  Bridging art and science with creativity support tools. Proceedings of the 6th ACM SIGCHI conference on Creativity & cognition.
Shi W, Wahba G, Irizarry RA, Bravo HCorrada, Wright SJ.  2012.  The partitioned LASSO-patternsearch algorithm with application to gene expression data. BMC bioinformaticsBMC Bioinformatics. 13
Sharmin M, Bravo HCorrada, Hannenhalli SS.  2015.  Heterogeneity of Transcription Factor binding specificity models within and across cell lines.
Sharmin M, Bravo éctorCorrada, Hannenhalli S.  2016.  Distinct genomic and epigenomic features demarcate hypomethylated blocks in colon cancer. BMC Cancer. 16447943582141728452710921541113181321912(17143623521101753416231113)
Sharmin M, Bravo éctorCorrada, Hannenhalli S.  2016.  Heterogeneity of transcription factor binding specificity models within and across cell lines. Genome Research. :gr.199166.115.
Shan L, Yang H-C, S. Rabi A, Bravo HCorrada, Shroff NS, Irizarry RA, Zhang H, Margolick JB, Siliciano JD, Siliciano RF.  2011.  Influence of host gene transcription level and orientation on HIV-1 latency in a primary-cell model. Journal of virologyJournal of virology. 85
Shan L., Yang H.-C., Rabi S.A, Bravo H.C, Shroff N.S, Irizarry R.A, Zhang H., Margolick J.B, Siliciano J.D, Siliciano R.F.  2011.  Influence of Host Gene Transcription Level and Orientation on HIV-1 Latency in a Primary-Cell Model. Journal of Virology. 85(11):5384-5393.
Shaked I, Oberhardt  A., Atias N, Sharan R, Ruppin E.  2016.  Metabolic Network Prediction of Drug Side Effects. Cell Systems. 2(3):209-213.
Shahri HHaidarian, Namata G, Navlakha S, Deshpande A, Roussopoulos N.  2007.  A graph-based approach to vehicle tracking in traffic camera video streams. Proceedings of the 4th workshop on Data management for sensor networks: in conjunction with 33rd International Conference on Very Large Data Bases.
Shah R, Lu Y, Hinkle CC, McGillicuddy FC, Kim R, Hannenhalli S, Cappola TP, Heffron S, Wang XM, Mehta NN et al..  2009.  Gene Profiling of Human Adipose Tissue During Evoked Inflammation In Vivo. DiabetesDiabetesDiabetesDiabetes. 58

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