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2010
Navlakha S., Kingsford C.  2010.  The power of protein interaction networks for associating genes with diseases. BioinformaticsBioinformatics. 26
Vishnoi A, Kryazhimskiy S, Bazykin GA, Hannenhalli S, Plotkin JB.  2010.  Young Proteins Experience More Variable Selection Pressures Than Old Proteins. Genome ResearchGenome Res.Genome ResearchGenome Res.. 20
2009
Kingsford C, Nagarajan N, Salzberg SL.  2009.  2009 Swine-Origin Influenza A (H1N1) Resembles Previous Influenza Isolates. PLoS ONEPLoS ONEPLoS ONEPLoS ONE. 4
Chun J., Grim C.J, Hasan N.A, Lee J.H, Choi S.Y, Haley B.J, Taviani E., Jeon Y.S, Kim D.W, Lee J.H et al..  2009.  Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae. Proceedings of the National Academy of SciencesProceedings of the National Academy of Sciences. 106
Di Bonaventura MPia, DeSalle R, Pop M., Nagarajan N, Figurski DH, Fine DH, Kaplan JB, Planet PJ.  2009.  Complete Genome Sequence of Aggregatibacter (Haemophilus) Aphrophilus NJ8700. Journal of BacteriologyJ. Bacteriol.Journal of BacteriologyJ. Bacteriol.. 191
Lapizco-Encinas G., Kingsford C, Reggia JA.  2009.  A cooperative combinatorial Particle Swarm Optimization algorithm for side-chain packing. IEEE Swarm Intelligence Symposium, 2009. SIS '09.
Grim CJ, Jaiani E, Whitehouse CA, Janelidze N, Kokashvili T, Tediashvili M, Colwell RR, Huq A.  2009.  Detection of toxigenic Vibrio cholerae O1 in freshwater lakes of the former Soviet Republic of Georgia. Environmental Microbiology ReportsEnvironmental Microbiology Reports. 2
Bravo HCorrada, Wright S, Eng KH, Keles S, Wahba G.  2009.  Estimating Tree-Structured Covariance Matrices via Mixed-Integer Programming. J Mach Learn Res. 5:41-48.
Hannenhalli S, Kaestner KH.  2009.  The evolution of Fox genes and their role in development and disease. Nature reviews. GeneticsNat Rev GenetNature reviews. GeneticsNat Rev Genet. 10
Bravo H.C, Lee K.E, Klein B.EK, Klein R., Iyengar S.K, Wahba G..  2009.  Examining the relative influence of familial, genetic, and environmental covariate information in flexible risk models. Proceedings of the National Academy of Sciences. 106(20):8128-8133.
Bravo H.C, Lee K.E, Klein B.EK, Klein R., Iyengar S.K, Wahba G..  2009.  Examining the relative influence of familial, genetic, and environmental covariate information in flexible risk models. Proceedings of the National Academy of Sciences. 106(20):8128-8133.
Navlakha S., White J.R, Nagarajan N., Pop M., Kingsford C.  2009.  Finding Biologically Accurate Clusterings in Hierarchical Decompositions Using the Variation of Information. Lecture Notes in Computer Science: Research in Computational Molecular BiologyLecture Notes in Computer Science: Research in Computational Molecular Biology. 5541
Shah R, Lu Y, Hinkle CC, McGillicuddy FC, Kim R, Hannenhalli S, Cappola TP, Heffron S, Wang XM, Mehta NN et al..  2009.  Gene Profiling of Human Adipose Tissue During Evoked Inflammation In Vivo. DiabetesDiabetesDiabetesDiabetes. 58
Brettin TS, Bruce DC, Challacombe JF, Detter JC, Han CS, Munik A.C, Chertkov O, Meincke L, Saunders E, Choi SY et al..  2009.  Genome assortment, not serogroup, defines Vibrio cholerae pandemic strains. NatureNature.
Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L et al..  2009.  InterPro: the integrative protein signature database.. Nucleic Acids Res. 37(Database issue):D211-5.
Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L et al..  2009.  InterPro: the integrative protein signature database.. Nucleic Acids Res. 37(Database issue):D211-5.
Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L et al..  2009.  InterPro: the integrative protein signature database. Nucleic acids researchNucleic Acids Research. 37
Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L et al..  2009.  InterPro: the integrative protein signature database. Nucleic acids researchNucleic Acids Research. 37
Bloom JS, Khan Z, Kruglyak L, Singh M, Caudy AA.  2009.  Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays. BMC Genomics. 10(1):221.
Bloom JS, Khan Z, Kruglyak L, Singh M, Caudy AA.  2009.  Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays. BMC Genomics. 10(1):221.
Bloom JS, Khan Z, Kruglyak L, Singh M, Caudy AA.  2009.  Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays.. BMC Genomics. 10:221.
Bloom JS, Khan Z, Kruglyak L, Singh M, Caudy AA.  2009.  Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays.. BMC Genomics. 10:221.
Bowler C, Karl DM, Colwell RR.  2009.  Microbial oceanography in a sea of opportunity. NatureNature. 459
Khondker M, Bhuiyan RAhmed, Yeasmin J, Alam M, R. Sack B, Huq A, Colwell RR.  2009.  New records of phytoplankton for Bangladesh. 9. Some rare and a new species. Bangladesh Journal of Plant TaxonomyBangladesh Journal of Plant Taxonomy. 16
Eng K.H, Bravo HCorrada, Keles S..  2009.  A phylogenetic mixture model for the evolution of gene expression. Molecular biology and evolutionMolecular biology and evolution. 26

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