Assembly Data

This page contains links to many of the genomes we have assembled at CBCB. The "Data download" link will take you to a page where you can get the assembly of the genome itself, along with genome annotation (in some cases). The "Lab notes" link on some of these genomes contains information about the particular techniques and tricks we used to assemble each genome.

See the Genome Assembly page for more information on our research on assembly algorithms.


Genome
Sequencing Center
Assembler
Downloads
Bos taurus (domestic cow) Baylor HGSC
Celera Assembler
and UMD Overlapper
Data download
See our paper in Genome Biology on the cow assembly
 
Trichomonas vaginalis TIGR
Celera Assembler Assembly Archive
Lab Notes
 
Brugia malayi
TIGR
Celera Assembler Data download
Lab Notes
 
Caenorhabditis briggsae
Sanger Center
Celera Assembler Data download
 
Tetrahymena thermophila TIGR
Celera Assembler Data download
 
Trypanosoma cruzi TIGR
Celera Assembler Data download
Lab Notes
 
Drosophila pseudoobscura Baylor College of Medicine
Human Genome Sequencing Center
Celera Assembler Data download (ftp)
GenBank entry
Lab Notes
 
Drosophila yakuba Washington University
Genome Sequencing Center
Celera Assembler Data download
 
Drosophila virilis Agencourt Bioscience Celera Assembler Data download
Assembly Archive
Lab Notes

Drosophila (fruit fly) endosymbionts
Steven Salzberg and colleagues identified the sequence of the bacterial endosymbiont Wolbachia within the publicly available sequence data of several species of fruit fly.  These results were reported in the open access journal Genome Biology:
Salzberg, S.L., Hotopp, J.C., Delcher, A.L., Pop, M., Smith, D.R., Eisen, M.B., Nelson, W.C. (2005) Serendipitous discovery of Wolbachia genomes in multiple Drosophila species. Genome Biol 6 (3):R23.
The assemblies of the endosymbiont genomes were performed with AMOScmp, and they can be obtained from:
Wolbachia endosymbiont of Drosophila annanasae - GenBank entry
Wolbachia endosymbiont of Drosophila simulans -  GenBank entry
Wolbachia endosymbiont of Drosophila willistoni - (contigs)  (trace IDs)

Bacterial Genomes

Genome
Sequencing Center
Assembler
Downloads
Bacillus Anthracis
Ames Ancestor
*
TIGR Celera Assembler Assembly Archive
 
Bacillus Anthracis
str. A1055
*
TIGR Celera Assembler Assembly Archive
 
Bacillus Anthracis
str. Australia 94
*
TIGR Celera Assembler Assembly Archive
 
Bacillus Anthracis
str. CNEVA-9066
*
TIGR Celera Assembler Assembly Archive
 
Bacillus Anthracis
str. Kruger B
*
TIGR Celera Assembler Assembly Archive
 
Bacillus Anthracis
str. Vollum
*
TIGR Celera Assembler Assembly Archive
 
Bacillus Anthracis
str. Western North America USA5153
*
TIGR Celera Assembler Assembly Archive
 
Borrelia afzelii TIGR Celera Assembler Lab Notes
 
Burkholderia cepacia R1808
DOE Joint Genome Institute Celera Assembler Data download

Chloroflexus aurantiacus
DOE Joint Genome Institute Celera Assembler Data download

Methylobacillus flagellatus
DOE Joint Genome Institute Celera Assembler Data download

Pseudomonas aeruginosa PAb1 CBCB AMOScmp, Velvet Data download

Xanthomonas oryzae
pathovar oryzicola
TIGR Celera Assembler Data download
Lab Notes

Xylella fastidiosa ANN1 DOE Joint Genome Institute Celera Assembler Data download
 
Xylella fastidiosa DIXON
DOE Joint Genome Institute Celera Assembler Data download
 
 
*Assemblies completed in partnership with TIGR