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Balch T, Khan Z, Veloso M.  2001.  Automatically tracking and analyzing the behavior of live insect colonies. the fifth international conferenceProceedings of the fifth international conference on Autonomous agents - AGENTS '01.
A
Acevedo MA, Corrada-Bravo CJ, Corrada-Bravo H, Villanueva-Rivera LJ, T. Aide M.  2009.  Automated classification of bird and amphibian calls using machine learning: A comparison of methods. Ecological Informatics. 4(4):206-214.
Attardo GM, Strickler-Dinglasan P, Perkin SAH, Caler E, Bonaldo MF, Soares MB, El-Sayeed N, Aksoy S.  2006.  Analysis of fat body transcriptome from the adult tsetse fly, Glossina morsitans morsitans.. Insect Mol Biol. 15(4):411-24.
C
Chun J., Rivera I.NG, Colwell RR.  2002.  Analysis of 16S-23S rRNA intergenic spacer of Vibrio cholerae and Vibrio mimicus for detection of these species. METHODS IN MOLECULAR BIOLOGYMETHODS IN MOLECULAR BIOLOGY. 179
Colwell RR.  2003.  ANNUAL REVIEW & FORECAST REPORTS-THE OCEANS: TO PROTECT AND TO PLOW. Sea TechnologySea Technology. 44
Cummings MP, Myers D.S, Mangelson M..  2004.  Applying permutation tests to tree-based statistical models: extending the R package rpart. 2004-24
Cummings MP.  2013.  AWTY, BAMBE, BEAGLE, BEAST, BEAUti, Bio++, DataMonkey, DendroPy, DnaSP, ENCprime/SeqCount, FigTree, GARLI, genealogical sorting index (gsi), HyPhy, IMa2, jModelTest, JELLYFISH, LAMARC, MacClade, MEGA, Mesquite. Dictionary of Bioinformatics.
D
Darling AE, Treangen T, Messeguer X, Perna NT.  2007.  Analyzing patterns of microbial evolution using the mauve genome alignment system. Comparative Genomics. :135–152.
Diehl S, Diehl F, El-Sayed NM, Clayton C, Hoheisel JD.  2002.  Analysis of stage-specific gene expression in the bloodstream and the procyclic form of Trypanosoma brucei using a genomic DNA-microarray.. Mol Biochem Parasitol. 123(2):115-23.
Diehl S, Diehl F, El‐Sayed NM, Clayton C, Hoheisel JD.  2002.  Analysis of stage-specific gene expression in the bloodstream and the procyclic form of Trypanosoma brucei using a genomic DNA-microarray. Molecular and Biochemical ParasitologyMolecular and Biochemical Parasitology. 123
E
El‐Sayed NM, Donelson J.E.  1997.  African trypanosomes have differentially expressed genes encoding homologues of the Leishmania GP63 surface protease. Journal of Biological ChemistryJournal of Biological Chemistry. 272
El‐Sayed NM, Hegde P, Quackenbush J, Melville SE, Donelson JE.  2000.  The African trypanosome genome. International Journal for ParasitologyInternational Journal for Parasitology. 30
El‐Sayed NM, Bartholomeu D, Ivens A, Johnston DA, LoVerde PT.  2004.  Advances in schistosome genomics. Trends in ParasitologyTrends in Parasitology. 20
G
Giancarlo R., Hannenhalli S.  2007.  Algorithms in Bioinformatics: 7th International Workshop, WABI 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings. 4645
H
Haft DH, Payne SH, Selengut J..  2012.  Archaeosortases and exosortases are widely distributed systems linking membrane transit with posttranslational modification. Journal of bacteriologyJournal of bacteriology. 194
Haft DH, Payne SH, Selengut JD.  2012.  Archaeosortases and exosortases are widely distributed systems linking membrane transit with posttranslational modification.. J Bacteriol. 194(1):36-48.
Hannenhalli S, Russell R.B.  2001.  Analysis and prediction of protein functional sub-types from protein sequence alignments.
Hannenhalli S, Russell RB.  2000.  Analysis and prediction of functional sub-types from protein sequence alignments. Journal of Molecular BiologyJournal of Molecular Biology. 303
Hashmi N., Lee S., Cummings MP.  2004.  Abstracting workflows: unifying bioinformatics task conceptualization and specification through Semantic Web services. W3C Workshop on Semantic Web for Life Sciences.
Huq A., Grim C.J, Colwell RR.  2011.  Aquatic Realm and Cholera. Epidemiological and Molecular Aspects on CholeraEpidemiological and Molecular Aspects on Cholera.
J
Joseph SJ, Fernández-Robledo JA, Gardner MJ, El-Sayed NM, Kuo C-H, Schott EJ, Wang H, Kissinger JC, Vasta GR.  2010.  The Alveolate Perkinsus marinus: biological insights from EST gene discovery.. BMC Genomics. 11:228.
K
Khan Z, Amini S, Bloom JS, Ruse C, Caudy AA, Kruglyak L, Singh M, Perlman DH, Tavazoie S.  2011.  Accurate proteome-wide protein quantification from high-resolution 15N mass spectra. Genome Biology. 12(12):R122.
Khan Z, Amini S, Bloom JS, Ruse C, Caudy AA, Kruglyak L, Singh M, Perlman DH, Tavazoie S.  2011.  Accurate proteome-wide protein quantification from high-resolution 15N mass spectra.. Genome Biol. 12(12):R122.
Kingsford C, Schatz M., Pop M..  2010.  Assembly complexity of prokaryotic genomes using short reads. BMC bioinformaticsBMC Bioinformatics. 11
Koren S, Treangen T, Hill CM, Pop M, Phillippy AM.  2014.  Automated ensemble assembly and validation of microbial genomes.. BMC Bioinformatics. 15:126.

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