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Waisberg M, Cerqueira GC, Yager SB, Francischetti IMB, Lu J, Gera N, Srinivasan P, Miura K, Rada B, Lukszo J et al.. 2012. Plasmodium falciparum merozoite surface protein 1 blocks the proinflammatory protein S100P.. Proc Natl Acad Sci U S A. 109(14):5429-34.

Yizhak K, Gaude E, Le Dévédec S, Waldman YY, Stein GY, van de Water B, Frezza C, Ruppin E. 2014. Phenotype-based cell-specific metabolic modeling reveals metabolic liabilities of cancer.. Elife. 3

Shi W, Wahba G, Irizarry RA, Bravo HCorrada, Wright SJ. 2012. The partitioned LASSO-patternsearch algorithm with application to gene expression data. BMC bioinformaticsBMC Bioinformatics. 13

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Aryee MJ, Jaffe AE, Corrada-Bravo H, Ladd-Acosta C, Feinberg AP, Hansen KD, Irizarry RA. 2014. Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.. Bioinformatics. 30(10):1363-9.

Selengut J.. 2001. MDP-1 is a new and distinct member of the haloacid dehalogenase family of aspartate-dependent phosphohydrolases. BiochemistryBiochemistry. 40

Khan Z, Balch T, Dellaert F. 2005. MCMC-based particle filtering for tracking a variable number of interacting targets.. IEEE Trans Pattern Anal Mach Intell. 27(11):1805-19.

Todd GJ, Schwartz A, Rapoport F. 1989. Management of an enlarging aortic aneurysm in the presence of radiation induced retroperitoneal fibrosis.. J Cardiovasc Surg (Torino). 30(2):233-5.

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Guo M, Mount SM. 1995. Localization of sequences required for size-specific splicing of a small Drosophila intron in vitro.. J Mol Biol. 253(3):426-37.

Mount S, Steitz J. 1983. Lessons from mutant globins.. Nature. 303(5916):380-1.

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Shan L, Yang H-C, S. Rabi A, Bravo HCorrada, Shroff NS, Irizarry RA, Zhang H, Margolick JB, Siliciano JD, Siliciano RF. 2011. Influence of host gene transcription level and orientation on HIV-1 latency in a primary-cell model. Journal of virologyJournal of virology. 85

Bennett J., Dretler S.P, Selengut J., Orme-Johnson W.H. 1994. Identification of the calcium-binding protein calgranulin in the matrix of struvite stones. Journal of endourology / Endourological SocietyJournal of endourology / Endourological Society. 8

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Blanco MAndres, LeRoy G, Khan Z, Alečković M, Zee BM, Garcia BA, Kang Y. 2012. Global secretome analysis identifies novel mediators of bone metastasis.. Cell Res. 22(9):1339-55.

Battle A, Khan Z, Wang SH, Mitrano A, Ford MJ, Pritchard JK, Gilad Y. 2015. Genomic variation. Impact of regulatory variation from RNA to protein.. Science. 347(6222):664-7.

Mount SM. 2000. Genomic sequence, splicing, and gene annotation.. Am J Hum Genet. 67(4):788-92.

Smircich P, Forteza D, El-Sayed NM, Garat B. 2013. Genomic analysis of sequence-dependent DNA curvature in Leishmania.. PLoS One. 8(4):e63068.

Severance S, Rajagopal A, Rao AU, Cerqueira GC, Mitreva M, El-Sayed NM, Krause M, Hamza I. 2010. Genome-wide analysis reveals novel genes essential for heme homeostasis in Caenorhabditis elegans.. PLoS Genet. 6(7):e1001044.

Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S et al.. 2002. Genome sequence of the human malaria parasite Plasmodium falciparum. NatureNature. 419

Teixeira SM, El-Sayed NM, Araújo PR. 2011. The genome and its implications.. Adv Parasitol. 75:209-30.

Bravo HCorrada, Pihur V, McCall M, Irizarry RA, Leek JT. 2012. Gene expression anti-profiles as a basis for accurate universal cancer signatures. BMC bioinformaticsBMC Bioinformatics. 13

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Choi J, El-Sayed NM. 2012. Functional genomics of trypanosomatids.. Parasite Immunol. 34(2-3):72-9.

Dogan RIslamaj, Getoor L, W Wilbur J, Mount SM. 2007. Features generated for computational splice-site prediction correspond to functional elements.. BMC Bioinformatics. 8:410.

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Lin C-F, Mount SM, Jarmołowski A, Makałowski W. 2010. Evolutionary dynamics of U12-type spliceosomal introns.. BMC Evol Biol. 10:47.

Rangarajan N, Kulkarni P, Hannenhalli S. 2015. Evolutionarily conserved network properties of intrinsically disordered proteins.. PLoS One. 10(5):e0126729.

Malin J., Aniba M.R, Hannenhalli S. 2013. Enhancer networks revealed by correlated DNAse hypersensitivity states of enhancers. Nucleic Acids ResNucleic Acids ResNucleic Acids Res. 41:6828-38.

Uziel O, Yosef N, Sharan R, Ruppin E, Kupiec M, Kushnir M, Beery E, Cohen-Diker T, Nordenberg J, Lahav M. 2015. The effects of telomere shortening on cancer cells: a network model of proteomic and microRNA analysis.. Genomics. 105(1):5-16.

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