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2009
Zo Y-G, Chokesajjawatee N, Grim C, Arakawa E, Watanabe H, Colwell RR.  2009.  Diversity and Seasonality of Bioluminescent Vibrio Cholerae Populations in Chesapeake Bay. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 75
2010
Taviani E, Grim CJ, Choi J, Jongsik C, Haley B, Hasan NA, Huq A, Colwell RR.  2010.  Discovery of novel Vibrio cholerae VSP‐II genomic islands using comparative genomic analysis. FEMS Microbiology LettersFEMS Microbiology Letters. 308
Purdy AE, Balch D, Lizárraga‐Partida MLeonardo, Islam MSirajul, Martinez‐Urtaza J, Huq A, Colwell RR, Bartlett DH.  2010.  Diversity and distribution of cholix toxin, a novel ADP‐ribosylating factor from Vibrio cholerae. Environmental Microbiology ReportsEnvironmental Microbiology Reports. 2
2011
Korpal M, Ell BJ, Buffa FM, Ibrahim T, Blanco MA, Celià-Terrassa T, Mercatali L, Khan Z, Goodarzi H, Hua Y et al..  2011.  Direct targeting of Sec23a by miR-200s influences cancer cell secretome and promotes metastatic colonization.. Nat Med. 17(9):1101-8.
Korpal M, Ell BJ, Buffa FM, Ibrahim T, Blanco MA, Terrassa Tà-, Mercatali L, Khan Z, Goodarzi H, Hua Y et al..  2011.  Direct targeting of Sec23a by miR-200s influences cancer cell secretome and promotes metastatic colonization. Nature Medicine. 17(9):1101-1108.
Ghodsi M, Liu B, Pop M..  2011.  DNACLUST: accurate and efficient clustering of phylogenetic marker genes. BMC BioinformaticsBMC Bioinformatics. 12
2012
Liu B., Faller L.L, Klitgord N., Mazumdar V., Ghodsi M., Sommer D.D, Gibbons T.R, Treangen T, Chang Y.C, Li S. et al..  2012.  Deep Sequencing of the Oral Microbiome Reveals Signatures of Periodontal Disease. PloS onePLoS One. 7
Wang Y-C, Khan Z, Kaschube M, Wieschaus EF.  2012.  Differential positioning of adherens junctions is associated with initiation of epithelial folding. Nature. 484(7394):390-393.
Wang Y-C, Khan Z, Kaschube M, Wieschaus EF.  2012.  Differential positioning of adherens junctions is associated with initiation of epithelial folding.. Nature. 484(7394):390-3.
Nelson KS, Khan Z, Molnár I, Mihály J, Kaschube M, Beitel GJ.  2012.  Drosophila Src regulates anisotropic apical surface growth to control epithelial tube size.. Nat Cell Biol. 14(5):518-25.
Nelson KS, Khan Z, r Iá, ly ózsefá, Kaschube M, Beitel GJ.  2012.  Drosophila Src regulates anisotropic apical surface growth to control epithelial tube size. Nature Cell Biology. 14(5):518-525.
2013
Ghodsi M, Hill CM, Astrovskaya I, Lin H, Sommer DD, Koren S, Pop M..  2013.  De novo likelihood-based measures for comparing genome assemblies. BMC research notes. 6
Hill CM, Astrovskaya I, Huang H, Koren S, Memon A, Treangen T, Pop M.  2013.  De novo likelihood-based measures for comparing metagenomic assemblies. 2013 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).
Boca SM, Bravo HCorrada, Caffo B, Leek JT, Parmigiani G.  2013.  A decision-theory approach to interpretable set analysis for high-dimensional data. BiometricsBiometrics. 69
Kim R., Kulkarni P., Hannenhalli S.  2013.  Derepression of Cancer/testis antigens in cancer is associated with distinct patterns of DNA hypomethylation. BMC CancerBMC CancerBMC Cancer. 13:144.
Paulson JN, O. Stine C, Bravo HCorrada, Pop M..  2013.  Differential abundance analysis for microbial marker-gene surveys. Nature methods. 10
Wang Y-C, Khan Z, Wieschaus  F..  2013.  Distinct Rap1 Activity States Control the Extent of Epithelial Invagination via α-Catenin. Developmental Cell. 25(3):299-309.
Wang Y-C, Khan Z, Wieschaus EF.  2013.  Distinct Rap1 activity states control the extent of epithelial invagination via α-catenin.. Dev Cell. 25(3):299-309.
2014
Alemu E.Y, Carl J.W, H. Bravo C, Hannenhalli S..  2014.  Determinants of expression variability. Nucleic Acids Research. 42(6):3503-3514.
Darnell DK, Zhang LS, Hannenhalli S, Yaklichkin SY.  2014.  Developmental expression of chicken FOXN1 and putative target genes during feather development.. Int J Dev Biol. 58(1):57-64.
Pop M, Walker AW, Paulson J, Lindsay B, Antonio M, M Hossain A, Oundo J, Tamboura B, Mai V, Astrovskaya I et al..  2014.  Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition.. Genome Biol. 15(6):R76.
2015
Rabinovich S, Adler L, Yizhak K, Sarver A, Silberman A, Agron S, Stettner N, Sun Q, Brandis A, Helbling D et al..  2015.  Diversion of aspartate in ASS1-deficient tumours fosters de novo pyrimidine synthesis. Nature. 527(7578):379-383.
Wagner A, Cohen N, Kelder T, Amit U, Liebman E, Steinberg DM, Radonjic M, Ruppin E.  2015.  Drugs that reverse disease transcriptomic signatures are more effective in a mouse model of dyslipidemia.. Mol Syst Biol. 11(3):791.
2016
Auslander N, Wagner A, Oberhardt M, Ruppin E.  2016.  Data-Driven Metabolic Pathway Compositions Enhance Cancer Survival Prediction. PLOS Computational Biology. 12(9):e1005125.
Sharmin M, Bravo éctorCorrada, Hannenhalli S.  2016.  Distinct genomic and epigenomic features demarcate hypomethylated blocks in colon cancer. BMC Cancer. 16447943582141728452710921541113181321912(17143623521101753416231113)

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