Publications
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2012. Epigenomic model of cardiac enhancers with application to Genome wideassociation studies. Pacific Symposium on BiocomputingPacific Symposium on Biocomputing.
2008. Environmental Vibrio spp., isolated in Mozambique, contain a polymorphic group of integrative conjugative elements and class 1 integrons. FEMS Microbiology EcologyFEMS Microbiology Ecology. 64
2008. Environmental signatures associated with cholera epidemics. Proceedings of the National Academy of SciencesProceedings of the National Academy of Sciences. 105
2010. Environmental reservoirs of Vibrio cholerae and their role in cholera. Environmental Microbiology ReportsEnvironmental Microbiology Reports. 2
2001. Enrichment of Regulatory Signals in Conserved Non-Coding Genomic Sequence. BioinformaticsBioinformaticsBioinformaticsBioinformatics. 17
2013. Enhancer networks revealed by correlated DNAse hypersensitivity states of enhancers. Nucleic Acids ResNucleic Acids ResNucleic Acids Res. 41:6828-38.
2003. Emergence and Evolution of Vibrio Cholerae O139. Proceedings of the National Academy of SciencesPNASProceedings of the National Academy of SciencesPNAS. 100
2005. eGenomics: Cataloguing our Complete Genome Collection. Comparative and functional genomicsComparative and functional genomics. 6
2002. Effects of Global Climate on Infectious Disease: The Cholera Model. Clinical Microbiology ReviewsClin. Microbiol. Rev.Clinical Microbiology ReviewsClin. Microbiol. Rev.. 15
2003. Effectiveness of conservation targets in capturing genetic diversity. Conserv BiolConserv Biol. 17
2011. Effective detection of rare variants in pooled DNA samples using Cross-pool tailcurve analysis. Genome Biology. 12(9):R93.
2010. Effect on Human Cells of Environmental Vibrio Parahaemolyticus Strains Carrying Type III Secretion System 2. Infection and ImmunityInfect. Immun.Infection and ImmunityInfect. Immun.. 78
2006. Effect of transport at ambient temperature on detection and isolation of Vibrio cholerae from environmental samples. Applied and environmental microbiologyApplied and environmental microbiology. 72
1998. The effect of calprotectin on the nucleation and growth of struvite crystals as assayed by light microscopy in real-time. The Journal of urologyThe Journal of urology. 159
2015. Evolutionary Conservation of Bacterial Essential Metabolic Genes across All Bacterial Culture Media. PLOS ONE. 10(4):e0123785.
2014. An evaluation of Monte-Carlo logic and logicFS motivated by a study of the regulation of gene expression in heart failure. Journal of Applied Statistics. 41(9):1956-1975.
2015. Evaluation of BLAST-based edge-weighting metrics used for homology inference with the Markov Clustering algorithm.. BMC Bioinformatics. 16:218.
2014. Epiviz: interactive visual analytics for functional genomics data.. Nat Methods. 11(9):938-40.
2015. Epiviz: a view inside the design of an integrated visual analysis software for genomics. BMC Bioinformatics. 16(Suppl 11):S4.
2015. The effects of telomere shortening on cancer cells: a network model of proteomic and microRNA analysis.. Genomics. 105(1):5-16.
2010. Exploring Biological Network Dynamics with Ensembles of Graph Partitions. Proceedings of the PSB Pacific Symposium on Biocomputing. 15
2002. Experimental Construction of Very Large Scale DNA Databases with Associative Search. DNA computing: 7th International Workshop on DNA-Based Computers, DNA 7, Tampa, FL, USA, June 10-13, 2001: revised papers. 7
2001. Efficient perspective-accurate silhouette computation and applications. Proceedings of the seventeenth annual symposium on Computational geometry.