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P

Peng X, Mount SM. 1995. Genetic enhancement of RNA-processing defects by a dominant mutation in B52, the Drosophila gene for an SR protein splicing factor.. Mol Cell Biol. 15(11):6273-82.

N

Neel M.C, Cummings MP. 2003. Genetic consequences of ecological reserve design guidelines: An empirical investigation. Conserv GenetConserv Genet. 4

Nagarajan N., Navajas-Pérez R., Pop M., Alam M., Ming R., Paterson A.H, Salzberg S.L. 2008. Genome-wide analysis of repetitive elements in papaya. Tropical Plant BiologyTropical Plant Biology. 1

M

Myers GSA, Parker D, Al-Hasani K, Kennan RM, Seemann T, Ren Q, Badger JH, Selengut J., DeBoy RT, Tettelin H et al.. 2007. Genome sequence and identification of candidate vaccine antigens from the animal pathogen Dichelobacter nodosus. Nature biotechnologyNature biotechnology. 25

Myers GSA, Parker D, Al-Hasani K, Kennan RM, Seemann T, Ren Q, Badger JH, Selengut JD, DeBoy RT, Tettelin H et al.. 2007. Genome sequence and identification of candidate vaccine antigens from the animal pathogen Dichelobacter nodosus.. Nat Biotechnol. 25(5):569-75.

Mount SM. 1997. Genetic depletion reveals an essential role for an SR protein splicing factor in vertebrate cells.. Bioessays. 19(3):189-92.

Mount SM. 2000. Genomic sequence, splicing, and gene annotation.. Am J Hum Genet. 67(4):788-92.

Mount S, Henikoff S. 1993. Gene organization: nested genes take flight.. Curr Biol. 3(6):372-4.

Moran MAnn, Buchan A, González JM, Heidelberg JF, Whitman WB, Kiene RP, Henriksen JR, King GM, Belas R, Fuqua C et al.. 2004. Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. NatureNature. 432

Methé B.A, Nelson K.E, Eisen J.A, Paulsen I.T, Nelson W., Heidelberg J.F, Wu D., Wu M., Ward N., Beanan M.J et al.. 2003. Genome of Geobacter sulfurreducens: metal reduction in subsurface environments. Science (New York, N.Y.)Science (New York, N.Y.). 302

MacLeod A., Tweedie A., McLellan S., Taylor S., Hall N., Berriman M., El‐Sayed NM, Hope M., Turner C.MR, Tait A.. 2005. The genetic map and comparative analysis with the physical map of Trypanosoma brucei. Nucleic acids researchNucleic Acids Research. 33

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Loftus B., Anderson I., Davies R., Alsmark U.CM, Samuelson J., Amedeo P., Roncaglia P., Berriman M., Hirt R.P, Mann B.J et al.. 2005. The genome of the protist parasite Entamoeba histolytica. NatureNature. 433

Lewinski M.K, Bisgrove D., Shinn P., Chen H., Hoffmann C., Hannenhalli S, Verdin E., Berry C.C, Ecker J.R, Bushman F.D. 2005. Genome-Wide Analysis of Chromosomal Features Repressing Human Immunodeficiency Virus Transcription. Journal of VirologyJ. Virol.Journal of VirologyJ. Virol.. 79

K

Kelley DR, Liu B, Delcher AL, Pop M., Salzberg SL. 2012. Gene Prediction with Glimmer for Metagenomic Sequences Augmented by Classification and Clustering. Nucleic Acids ResearchNucl. Acids Res.Nucleic Acids ResearchNucl. Acids Res.. 40

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Hyötyläinen T, Jerby L, Petäjä EM, Mattila I, Jäntti S, Auvinen P, Gastaldelli A, Yki-Järvinen H, Ruppin E, Orešič M. 2016. Genome-scale study reveals reduced metabolic adaptability in patients with non-alcoholic fatty liver disease.. Nat Commun. 7:8994.

Heidelberg JF, Seshadri R, Haveman SA, Hemme CL, Paulsen IT, Kolonay JF, Eisen JA, Ward N, Methe B, Brinkac LM et al.. 2004. The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. Nature biotechnologyNature biotechnology. 22

Harrington R, Ondov BD, Radune D, Friss MBeth, Klubnik J, Diviak L, Hnath J, Cendrowski SR, Blank TE, Karaolis D et al.. 2013. Genome sequence of the attenuated Carbosap vaccine strain of Bacillus anthracis. Genome announcements. 1:e00067–12.

Hannenhalli S, Chappey C., Koonin E.V, Pevzner P.A,. 1995. Genome sequence comparison and scenarios for gene rearrangements: A test case. GenomicsGenomics. 30

Hannenhalli S, Chappey C, Koonin EV, Pevzner PA. 1995. Genome Sequence Comparison and Scenarios for Gene Rearrangements: A Test Case. GenomicsGenomics. 30

Haft DH, Selengut J., Brinkac LM, Zafar N, White O. 2005. Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics. Bioinformatics (Oxford, England)Bioinformatics (Oxford, England). 21

Haft DH, Selengut J., Mongodin EF, Nelson KE. 2005. A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS computational biologyPLOS Computational Biology. 1

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Grim CJ, Hasan NA, Taviani E, Haley B, Jongsik C, Brettin TS, Bruce DC, J. Detter C, Han CS, Chertkov O et al.. 2010. Genome Sequence of Hybrid Vibrio Cholerae O1 MJ-1236, B-33, and CIRS101 and Comparative Genomics with V. Cholerae. Journal of BacteriologyJ. Bacteriol.Journal of BacteriologyJ. Bacteriol.. 192

Giancarlo R., Hannenhalli S. 2008. Guest Editors' Introduction to the Special Section on Algorithms in Bioinformatics (WABI'07). IEEE/ACM Transactions on Computational Biology and BioinformaticsIEEE/ACM Transactions on Computational Biology and Bioinformatics.

Ghedin E, Bringaud F, Peterson J, Myler P, Berriman M, Ivens A, Andersson B, Bontempi E, Eisen J, Angiuoli S et al.. 2004. Gene synteny and evolution of genome architecture in trypanosomatids.. Mol Biochem Parasitol. 134(2):183-91.

Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S et al.. 2002. Genome sequence of the human malaria parasite Plasmodium falciparum. NatureNature. 419

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