Publications

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Lewinski M.K, Bisgrove D., Shinn P., Chen H., Hoffmann C., Hannenhalli S, Verdin E., Berry C.C, Ecker J.R, Bushman F.D.  2005.  Genome-Wide Analysis of Chromosomal Features Repressing Human Immunodeficiency Virus Transcription. Journal of VirologyJ. Virol.Journal of VirologyJ. Virol.. 79
Lewinski M.K, Yamashita M., Emerman M., Ciuffi A., Marshall H., Crawford G., Collins F., Shinn P., Leipzig J., Hannenhalli S et al..  2006.  Retroviral DNA integration: viral and cellular determinants of target-site selection. PLoS pathogensPLoS pathogens. 2
Levy S, Hannenhalli S, Workman C.  2001.  Enrichment of Regulatory Signals in Conserved Non-Coding Genomic Sequence. BioinformaticsBioinformaticsBioinformaticsBioinformatics. 17
Levy S, Hannenhalli S.  2002.  Identification of transcription factor binding sites in the human genome sequence. Mammalian GenomeMammalian Genome. 13
Lerner MR, Boyle JA, Mount SM, Wolin SL, Steitz JA.  1980.  Are snRNPs involved in splicing? Nature. 283(5743):220-4.
Leparc G.G, Mitra R.D, Vardhanabhuti S., Wang J., Hannenhalli S, Smit S., Widmann J., Knight R., Wu S., Zhang Y. et al..  2007.  COMPUTATIONAL BIOLOGY. Nucleic acids researchNucleic Acids Research. 35
Leek JT, Scharpf RB, Bravo HCorrada, Simcha D, Langmead B, W. Johnson E, Geman D, Baggerly K, Irizarry RA.  2010.  Tackling the widespread and critical impact of batch effects in high-throughput data. Nature reviews. GeneticsNature reviews. Genetics. 11
Lee S., Wang T.D, Hashmi N., Cummings MP.  2007.  Bio-STEER: A Semantic Web workflow tool for Grid computing in the life sciences. Future Generation Comp SystFuture Generation Comp Syst. 23
Lee S.H, Kalejta R.F, Kerry J., Semmes O.J, O'Connor C.M, Khan Z., Garcia B.A, Shenk T., Murphy E..  2012.  BclAF1 restriction factor is neutralized by proteasomal degradation and microRNA repression during human cytomegalovirus infection. Proceedings of the National Academy of Sciences. 109(24):9575-9580.
Lee HSook, Kang SGyun, Bae SSeob, Lim JKyu, Cho Y, Kim YJae, Jeon JHo, Cha S-S, Kwon KKyoung, Kim H-T et al..  2008.  The Complete Genome Sequence of Thermococcus Onnurineus NA1 Reveals a Mixed Heterotrophic and Carboxydotrophic Metabolism. Journal of BacteriologyJ. Bacteriol.Journal of BacteriologyJ. Bacteriol.. 190
Lee S.H, Kalejta R.F, Kerry J., Semmes O.J, O'Connor C.M, Khan Z., Garcia B.A, Shenk T., Murphy E..  2012.  BclAF1 restriction factor is neutralized by proteasomal degradation and microRNA repression during human cytomegalovirus infection. Proceedings of the National Academy of Sciences. 109(24):9575-9580.
Lee SHee, Kalejta RF, Kerry J, Semmes OJohn, O'Connor CM, Khan Z, Garcia BA, Shenk T, Murphy E.  2012.  BclAF1 restriction factor is neutralized by proteasomal degradation and microRNA repression during human cytomegalovirus infection.. Proc Natl Acad Sci U S A. 109(24):9575-80.
Le Saux MFischer-, Hervio-Heath D, Loaec S, Colwell RR, Pommepuy M.  2002.  Detection of Cytotoxin-Hemolysin mRNA in Nonculturable Populations of Environmental and Clinical Vibrio Vulnificus Strains in Artificial Seawater. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 68
Le Breton Y, Belew AT, Valdes KM, Islam E, Curry P, Tettelin H, Shirtliff ME, El-Sayed NM, McIver KS.  2015.  Essential Genes in the Core Genome of the Human Pathogen Streptococcus pyogenes.. Sci Rep. 5:9838.
Lapizco-Encinas G., Kingsford C, Reggia JA.  2009.  A cooperative combinatorial Particle Swarm Optimization algorithm for side-chain packing. IEEE Swarm Intelligence Symposium, 2009. SIS '09.
Langmead B, Trapnell C, Pop M., Salzberg SL.  2009.  Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome BiologyGenome Biology. 10
Langmead B, Schatz MC, Jimmy L, Pop M., Salzberg SL.  2009.  Searching for SNPs with cloud computing. Genome BiologyGenome Biology. 10
LaCount D.J, El‐Sayed NM, Kaul S., Wanless D., Turner C.MR, Donelson J.E.  2001.  Analysis of a donor gene region for a variant surface glycoprotein and its expression site in African trypanosomes. Nucleic acids researchNucleic Acids Research. 29

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