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Treangen T, Darling AE, Ragan MA, Messeguer X. 2008. Lecture Notes in Computer ScienceBioinformatics Research and ApplicationsGapped Extension for Local Multiple Alignment of Interspersed DNA Repeats. 4983:74-86.

Treangen T, Salzberg SL. 2011. Repetitive DNA and next-generation sequencing: computational challenges and solutions. Nature Reviews Genetics.

Treangen T, Messeguer X. 2006. M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species. BMC bioinformatics. 7:433.

Treangen T, Schoeler G, Phillippy AM, Bergman NH, Turell MJ. 2016. Identification and genomic analysis of a novel group C orthobunyavirus isolated from a mosquito captured near Iquitos, Peru. PLoS Negl Trop Dis. 10:e0004440.

Treangen T, Darling AE, Achaz G, Ragan MA, Messeguer X, Rocha EPC. 2009. A novel heuristic for local multiple alignment of interspersed DNA repeats. IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB). 6:180–189.

Trivedi CM, Zhu W, Wang Q, Jia C, Kee HJin, Li L, Hannenhalli S, Epstein JA. 2010. Hopx and Hdac2 Interact to Modulate Gata4 Acetylation and Embryonic Cardiac Myocyte Proliferation. Developmental CellDevelopmental Cell. 19

tyläinen Tö, Jerby L, jä EM ä, Mattila I, ntti Sä, Auvinen P, Gastaldelli A, rvinen Hä, Ruppin E, ič Mš. 2016. Genome-scale study reveals reduced metabolic adaptability in patients with non-alcoholic fatty liver disease. Nature Communications. 7:8994.

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