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Journal Articles

Heidelberg JF, Seshadri R, Haveman SA, Hemme CL, Paulsen IT, Kolonay JF, Eisen JA, Ward N, Methe B, Brinkac LM et al.. 2004. The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. Nature biotechnologyNature biotechnology. 22

Heidelberg JF, Seshadri R, Haveman SA, Hemme CL, Paulsen IT, Kolonay JF, Eisen JA, Ward N, Methe B, Brinkac LM et al.. 2004. The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. Nature biotechnologyNature biotechnology. 22

Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S et al.. 2002. Genome sequence of the human malaria parasite Plasmodium falciparum. NatureNature. 419

Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S et al.. 2002. Genome sequence of the human malaria parasite Plasmodium falciparum. NatureNature. 419

Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S et al.. 2002. Genome sequence of the human malaria parasite Plasmodium falciparum. NatureNature. 419

Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S et al.. 2002. Genome sequence of the human malaria parasite Plasmodium falciparum. NatureNature. 419

El‐Sayed NM, Myler P.J, Bartholomeu D.C, Nilsson D., Aggarwal G., Tran A.N, Ghedin E., Worthey E.A, Delcher A.L, Blandin G. et al.. 2005. The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. ScienceScience. 309

Bishop-Lilly KA, Ge H, Butani A, Osborne B, Verratti K, Mokashi V, Nagarajan N, Pop M., Read TD, Richards AL. 2013. Genome sequencing of four strains of Rickettsia prowazekii, the causative agent of epidemic typhus, including one flying squirrel isolate. Genome announcementsGenome announcements. 1

Hyötyläinen T, Jerby L, Petäjä EM, Mattila I, Jäntti S, Auvinen P, Gastaldelli A, Yki-Järvinen H, Ruppin E, Orešič M. 2016. Genome-scale study reveals reduced metabolic adaptability in patients with non-alcoholic fatty liver disease.. Nat Commun. 7:8994.

tyläinen Tö, Jerby L, jä EM ä, Mattila I, ntti Sä, Auvinen P, Gastaldelli A, rvinen Hä, Ruppin E, ič Mš. 2016. Genome-scale study reveals reduced metabolic adaptability in patients with non-alcoholic fatty liver disease. Nature Communications. 7:8994.

Nagarajan N., Navajas-Pérez R., Pop M., Alam M., Ming R., Paterson A.H, Salzberg S.L. 2008. Genome-wide analysis of repetitive elements in papaya. Tropical Plant BiologyTropical Plant Biology. 1

Severance S, Rajagopal A, Rao AU, Cerqueira GC, Mitreva M, El-Sayed NM, Krause M, Hamza I. 2010. Genome-wide analysis reveals novel genes essential for heme homeostasis in Caenorhabditis elegans.. PLoS Genet. 6(7):e1001044.

G. Christopher V, Lucia P, Jennifer H.KChoi, Mathieu W, Devan J, J. Pepe H, Jennifer B, Karuna M, J. Alan P, Hannenhalli S et al.. 2012. Genomic analysis of sleep deprivation reveals translational regulation in the hippocampus. Physiological GenomicsPhysiological Genomics.

Chen PE, Cook C, Stewart AC, Nagarajan N, Sommer DD, Pop M., Thomason B, Thomason MPK, Lentz S, Nolan N et al.. 2010. Genomic characterization of the Yersinia genus. Genome BiologyGenome Biology. 11

Bartholomeu DC, Cerqueira GC, Leão ACarolina A, daRocha WD, Pais FS, Macedo C, Djikeng A, Teixeira SMR, El-Sayed NM. 2009. Genomic organization and expression profile of the mucin-associated surface protein (masp) family of the human pathogen Trypanosoma cruzi.. Nucleic Acids Res. 37(10):3407-17.

Mount SM. 2000. Genomic sequence, splicing, and gene annotation.. Am J Hum Genet. 67(4):788-92.

Battle A, Khan Z, Wang SH, Mitrano A, Ford MJ, Pritchard JK, Gilad Y. 2015. Genomic variation. Impact of regulatory variation from RNA to protein.. Science. 347(6222):664-7.

Tardito S, Oudin ïs, Ahmed SU, Fack F, Keunen O, Zheng L, Miletic H, Sakariassen Ø, Weinstock A, Wagner A et al.. 2015. Glutamine synthetase activity fuels nucleotide biosynthesis and supports growth of glutamine-restricted glioblastoma. Nature Cell Biology. 17(12):1556-1568.

Bazinet AL, Myers D.S, Fuetsch J., Cummings MP. 2007. Grid Services Base Library: A high-level, procedural application programming interface for writing Globus-based Grid services. Future Generation Comp SystFuture Generation Comp Syst. 23

Haft DH, Selengut J., Mongodin EF, Nelson KE. 2005. A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS computational biologyPLOS Computational Biology. 1

Frezza C, Zheng L, Folger O, Rajagopalan KN, MacKenzie ED, Jerby L, Micaroni M, Chaneton B, Adam J, Hedley A et al.. 2011. Haem oxygenase is synthetically lethal with the tumour suppressor fumarate hydratase.. Nature. 477(7363):225-8.

Frezza C, Zheng L, Folger O, Rajagopalan KN, MacKenzie ED, Jerby L, Micaroni M, Chaneton B, Adam J, Hedley A et al.. 2011. Haem oxygenase is synthetically lethal with the tumour suppressor fumarate hydratase.. Nature. 477(7363):225-8.

DanČÍK V., Hannenhalli S, Muthukrishnan S.. 1997. Hardness of flip-cut problems from optical mapping. Journal of Computational BiologyJournal of Computational Biology. 4

Hannenhalli S, Middleton R.P, Levy S., Perroud B., Holzwarth J.A, McDonald K., Hannah S.S,. 2006. Identification and cross-species comparison of canine osteoarthritic gene regulatory cis-elements. Osteoarthritis and cartilage/OARS, Osteoarthritis Research SocietyOsteoarthritis and cartilage/OARS, Osteoarthritis Research Society. 14

Hannenhalli S, Middleton R.P, Levy S., Perroud B., Holzwarth J.A, McDonald K., Hannah S.S,. 2006. Identification and cross-species comparison of canine osteoarthritic gene regulatory cis-elements. Osteoarthritis and cartilage/OARS, Osteoarthritis Research SocietyOsteoarthritis and cartilage/OARS, Osteoarthritis Research Society. 14

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