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Regier JC, Mitter C, Zwick A, Bazinet AL, Cummings MP, Kawahara AY, Sohn J-C, Zwickl DJ, Cho S, Davis DR et al..  2013.  A large-scale, higher-level, molecular phylogenetic study of the insect order Lepidoptera (moths and butterflies). PLoS OnePLoS One. 8
Regier JC, Mitter C, Zwick A, Bazinet AL, Cummings MP, Kawahara AY, Sohn J-C, Zwickl DJ, Cho S, Davis DR et al..  2013.  A large-scale, higher-level, molecular phylogenetic study of the insect order Lepidoptera (moths and butterflies). PLoS OnePLoS One. 8
Bazinet AL, Cummings MP.  2008.  The Lattice Project: a Grid research and production environment combining multiple Grid computing models. Distributed & Grid Computing — Science Made Transparent for Everyone. Principles, Applications and Supporting CommunitiesDistributed & Grid Computing — Science Made Transparent for Everyone. Principles, Applications and Supporting Communities.
Morris A, Paulson JN, Talukder H, Tipton L, Kling H, Cui L, Fitch A, Pop M, Norris KA, Ghedin E.  2016.  Longitudinal analysis of the lung microbiota of cynomolgous macaques during long-term SHIV infection. Microbiome. 4320384718719152130282021211818418719223326578105723(158836212108125732558101131110121arXiv:1006.3316)
Vezzulli L, Brettar I, Pezzati E, Reid PC, Colwell RR, Höfle MG, Pruzzo C.  2011.  Long-term effects of ocean warming on the prokaryotic community: evidence from the vibrios. The ISME JournalThe ISME journal. 6
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Cummings MP, Meyer A..  2005.  Magic bullets and golden rules: data sampling in molecular phylogenetics. Zoology (Jena)Zoology (Jena). 108
Colwell RR.  2008.  The marine environment and human health: the cholera model. Global Climate Change and Extreme Weather Events: Understanding the Contributions to Infectious Disease EmergenceGlobal Climate Change and Extreme Weather Events: Understanding the Contributions to Infectious Disease Emergence.
Wan L.B, Pan H., Hannenhalli S, Cheng Y., Ma J., Fedoriw A., Lobanenkov V., Latham K.E, Schultz R.M, Bartolomei M.S.  2008.  Maternal depletion of CTCF reveals multiple functions during oocyte and preimplantation embryo development. DevelopmentDevelopment. 135
Patro R., Ip CYiu, Bista S., Cho S.S, Thirumalai D., Varshney A.  2011.  MDMap: A system for data-driven layout and exploration of molecular dynamics simulations. Biological Data Visualization (BioVis), 2011 IEEE Symposium on.
Bloom JS, Khan Z, Kruglyak L, Singh M, Caudy AA.  2009.  Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays. BMC Genomics. 10(1):221.
Bloom JS, Khan Z, Kruglyak L, Singh M, Caudy AA.  2009.  Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays.. BMC Genomics. 10:221.
Bringaud F, Müller M, Cerqueira GCoutinho, Smith M, Rochette A, el-Sayed NMA, Papadopoulou B, Ghedin E.  2007.  Members of a large retroposon family are determinants of post-transcriptional gene expression in Leishmania.. PLoS Pathog. 3(9):1291-307.
Hasan NA, W. Chowdhury B, Rahim N, Sultana M, S. Shabnam A, Mai V, Ali A, Morris GJ, R. Sack B, Huq A et al..  2011.  Metagenomic 16S rDNA Targeted PCR-DGGE in Determining Bacterial Diversity in Aquatic Ecosystem. Bangladesh Journal of MicrobiologyBangladesh Journal of Microbiology. 27
Hasan NA, W. Chowdhury B, Rahim N, Sultana M, S. Shabnam A, Mai V, Ali A, Morris GJ, R. Sack B, Huq A et al..  2011.  Metagenomic 16S rDNA Targeted PCR-DGGE in Determining Bacterial Diversity in Aquatic Ecosystem. Bangladesh Journal of MicrobiologyBangladesh Journal of Microbiology. 27
Hasan NA, W. Chowdhury B, Rahim N, Sultana M, S. Shabnam A, Mai V, Ali A, Morris GJ, R. Sack B, Huq A et al..  2011.  Metagenomic 16S rDNA Targeted PCR-DGGE in Determining Bacterial Diversity in Aquatic Ecosystem. Bangladesh Journal of MicrobiologyBangladesh Journal of Microbiology. 27
Ghurye JS, Cepeda-Espinoza V, Pop M.  2016.  Metagenomic Assembly: Overview, Challenges and Applications. Yale J Biol Med. 89(3)
Rivera ING, Lipp EK, Gil A, Choopun N, Huq A, Colwell RR.  2003.  Method of DNA extraction and application of multiplex polymerase chain reaction to detect toxigenic Vibrio cholerae O1 and O139 from aquatic ecosystems. Environmental MicrobiologyEnvironmental Microbiology. 5
Rivera ING, Lipp EK, Gil A, Choopun N, Huq A, Colwell RR.  2003.  Method of DNA extraction and application of multiplex polymerase chain reaction to detect toxigenic Vibrio cholerae O1 and O139 from aquatic ecosystems. Environmental MicrobiologyEnvironmental Microbiology. 5
Waisberg M, Lobo F, Cerqueira G, Passos L, Carvalho O, Franco G, El‐Sayed NM.  2007.  Microarray analysis of gene expression induced by sexual contact in Schistosoma mansoni. BMC GenomicsBMC Genomics. 8
Waisberg M, Lobo F, Cerqueira G, Passos L, Carvalho O, Franco G, El‐Sayed NM.  2007.  Microarray analysis of gene expression induced by sexual contact in Schistosoma mansoni. BMC GenomicsBMC Genomics. 8
Colwell RR.  2006.  Microbial diversity in the era of genomics. SYMPOSIA-SOCIETY FOR GENERAL MICROBIOLOGY. 66
Bowler C, Karl DM, Colwell RR.  2009.  Microbial oceanography in a sea of opportunity. NatureNature. 459
Aryee MJ, Jaffe AE, Corrada-Bravo H, Ladd-Acosta C, Feinberg AP, Hansen KD, Irizarry RA.  2014.  Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.. Bioinformatics. 30(10):1363-9.
Field D, Garrity G, Gray T, Morrison N, Selengut J., Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV et al..  2008.  The minimum information about a genome sequence (MIGS) specification. Nature biotechnologyNature biotechnology. 26
Field D, Garrity G, Gray T, Morrison N, Selengut J., Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV et al..  2008.  The minimum information about a genome sequence (MIGS) specification. Nature biotechnologyNature biotechnology. 26

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