Publications

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Wagner A, Cohen N, Kelder T, Amit U, Liebman E, Steinberg DM, Radonjic M, Ruppin E.  2015.  Drugs that reverse disease transcriptomic signatures are more effective in a mouse model of dyslipidemia.. Mol Syst Biol. 11(3):791.
Wagner J, Paulson JN, Wang X, Bhattacharjee B, Bravo éctorCorrada.  2016.  Privacy-Preserving Microbiome Analysis Using Secure Computation. Bioinformatics. :btw073.
Wagner J, Paulson JN, Wang X-S, Bhattacharjee B, Bravo HCorrada.  2015.  Privacy-Preserving Microbiome Analysis Using Secure Computation.
Waisberg M, Lobo FP, Cerqueira GC, Passos LKJ, Carvalho OS, El-Sayed NM, Franco GR.  2008.  Schistosoma mansoni: Microarray analysis of gene expression induced by host sex.. Exp Parasitol. 120(4):357-63.
Waisberg M, Cerqueira GC, Yager SB, Francischetti IMB, Lu J, Gera N, Srinivasan P, Miura K, Rada B, Lukszo J et al..  2012.  Plasmodium falciparum merozoite surface protein 1 blocks the proinflammatory protein S100P.. Proc Natl Acad Sci U S A. 109(14):5429-34.
Waisberg M, Lobo F, Cerqueira G, Passos L, Carvalho O, Franco G, El‐Sayed NM.  2007.  Microarray analysis of gene expression induced by sexual contact in Schistosoma mansoni. BMC GenomicsBMC Genomics. 8
Darling AE, Treangen T, Messeguer X, Perna NT.  2007.  Methods in Molecular BiologyComparative GenomicsAnalyzing Patterns of Microbial Evolution Using the Mauve Genome Alignment System. 396:135-152.
Wan L.B, Pan H., Hannenhalli S, Cheng Y., Ma J., Fedoriw A., Lobanenkov V., Latham K.E, Schultz R.M, Bartolomei M.S.  2008.  Maternal depletion of CTCF reveals multiple functions during oocyte and preimplantation embryo development. DevelopmentDevelopment. 135
Wang Y-C, Khan Z, Kaschube M, Wieschaus EF.  2012.  Differential positioning of adherens junctions is associated with initiation of epithelial folding.. Nature. 484(7394):390-3.
Wang L.S, Jensen S., Hannenhalli S.  2006.  An interaction-dependent model for transcription factor binding. Systems Biology and Regulatory GenomicsSystems Biology and Regulatory Genomics.
Wang K, Das A, Xiong Z-M, Cao K, Hannenhalli S.  2015.  Phenotype-Dependent Coexpression Gene Clusters: Application to Normal and Premature Ageing. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 12(1):30-39.
Wang Y-C, Khan Z, Wieschaus  F..  2013.  Distinct Rap1 Activity States Control the Extent of Epithelial Invagination via α-Catenin. Developmental Cell. 25(3):299-309.
Wang J., Ungar L.H, Tseng H., Hannenhalli S.  2007.  MetaProm: a neural network based meta-predictor for alternative human promoter prediction. BMC genomicsBMC Genomics. 8
Wang K, Cao K, Hannenhalli S.  2015.  Chromatin and genomic determinants of alternative splicing. BCB '15 Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics .
Wang J, Hannenhalli S.  2005.  Generalizations of Markov model to characterize biological sequences. BMC BioinformaticsBMC Bioinformatics. 6
Wang Y-C, Khan Z, Wieschaus EF.  2013.  Distinct Rap1 activity states control the extent of epithelial invagination via α-catenin.. Dev Cell. 25(3):299-309.
Wang K, Das A, Xiong Z-M, Cao K, Hannenhalli S.  2013.  Identification of gene clusters with phenotype-dependent expression with application to normal and premature ageing. Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics. :377-383.
Wang J, Hannenhalli S.  2006.  A mammalian promoter model links cis elements to genetic networks. Biochemical and Biophysical Research CommunicationsBiochemical and Biophysical Research Communications. 347
Wang Y-C, Khan Z, Kaschube M, Wieschaus EF.  2012.  Differential positioning of adherens junctions is associated with initiation of epithelial folding. Nature. 484(7394):390-393.
Wang H, Duggal G, Patro R, Girvan M, Hannenhalli S, Kingsford C.  2013.  Topological properties of chromosome conformation graphs reflect spatial proximities within chromatin. Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics. :306-315.
Ward NL, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM, Wu M, Xie G, Haft DH, Sait M, Badger J et al..  2009.  Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils. Applied and environmental microbiologyApplied and environmental microbiology. 75
Ward NL, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM, Wu M, Xie G, Haft DH, Sait M, Badger J et al..  2009.  Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.. Appl Environ Microbiol. 75(7):2046-56.
Welch DBMark, Cummings MP, Hillis DM, Meselson M.  2004.  Divergent Gene Copies in the Asexual Class Bdelloidea (Rotifera) Separated Before the Bdelloid Radiation or Within Bdelloid Families. Proceedings of the National Academy of Sciences of the United States of AmericaPNASProceedings of the National Academy of Sciences of the United States of AmericaPNAS. 101
Westenberger S, Cerqueira G, El‐Sayed NM, Zingales B, Campbell D, Sturm N.  2006.  Trypanosoma cruzi mitochondrial maxicircles display species- and strain-specific variation and a conserved element in the non-coding region. BMC GenomicsBMC Genomics. 7

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