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Treangen T, Ambur OHerman, Tonjum T, Rocha EPC. 2008. The impact of the neisserial DNA uptake sequences on genome evolution and stability. Genome biology. 9:R60.

Treangen T, Ambur OHerman, Tonjum T, Rocha EPC. 2008. The impact of the neisserial DNA uptake sequences on genome evolution and stability. Genome biology. 9:R60.

Haas BJ, Delcher AL, Mount SM, Wortman JR, Smith RK, Hannick LI, Maiti R, Ronning CM, Rusch DB, Town CD et al.. 2003. Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies.. Nucleic Acids Res. 31(19):5654-66.

Pruzzo C., Tarsi R., Lleò M.M, Signoretto C., Zampini M., Colwell RR, Canepari P.. 2002. In vitro adhesion to human cells by viable but nonculturable Enterococcus faecalis. Current microbiologyCurrent microbiology. 45

Hansen KDaniel, Timp W, Bravo HCorrada, Sabunciyan S, Langmead B, McDonald OG, Wen B, Wu H, Liu Y, Diep D et al.. 2011. Increased methylation variation in epigenetic domains across cancer types. Nature Genetics. 43(8):768-775.

Takala-Harrison S., Jacob C.G, Arze C., Cummings MP, Silva J.C, Dondorp A.M, Fukuda M.M, Hien T.T, Mayxay M., Noedl H. et al.. 2015. Independent Emergence of Artemisinin Resistance Mutations Among Plasmodium falciparum in Southeast Asia. Journal of Infectious Diseases. 211:670-679.

Takala-Harrison S., Jacob C.G, Arze C., Cummings MP, Silva J.C, Dondorp A.M, Fukuda M.M, Hien T.T, Mayxay M., Noedl H. et al.. 2015. Independent Emergence of Artemisinin Resistance Mutations Among Plasmodium falciparum in Southeast Asia. Journal of Infectious Diseases. 211:670-679.

Takala-Harrison S., Jacob C.G, Arze C., Cummings MP, Silva J.C, Dondorp A.M, Fukuda M.M, Hien T.T, Mayxay M., Noedl H. et al.. 2015. Independent Emergence of Artemisinin Resistance Mutations Among Plasmodium falciparum in Southeast Asia. Journal of Infectious Diseases. 211:670-679.

Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S et al.. 2012. InterPro in 2011: new developments in the family and domain prediction database. Nucleic acids researchNucleic Acids Research. 40

Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S et al.. 2012. InterPro in 2011: new developments in the family and domain prediction database. Nucleic acids researchNucleic Acids Research. 40

Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S et al.. 2012. InterPro in 2011: new developments in the family and domain prediction database. Nucleic acids researchNucleic Acids Research. 40

Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S et al.. 2012. InterPro in 2011: new developments in the family and domain prediction database.. Nucleic Acids Res. 40(Database issue):D306-12.

Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S et al.. 2012. InterPro in 2011: new developments in the family and domain prediction database.. Nucleic Acids Res. 40(Database issue):D306-12.

Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S et al.. 2012. InterPro in 2011: new developments in the family and domain prediction database.. Nucleic Acids Res. 40(Database issue):D306-12.

Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L et al.. 2009. InterPro: the integrative protein signature database. Nucleic acids researchNucleic Acids Research. 37

Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L et al.. 2009. InterPro: the integrative protein signature database. Nucleic acids researchNucleic Acids Research. 37

Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L et al.. 2009. InterPro: the integrative protein signature database.. Nucleic Acids Res. 37(Database issue):D211-5.

Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L et al.. 2009. InterPro: the integrative protein signature database.. Nucleic Acids Res. 37(Database issue):D211-5.

Phillippy A, Treangen T. 2012. Irreconcilable differences: divorcing geographic mutation and recombination rates within a global MRSA clone. Genome Biology. 13

J

Auslander N, Yizhak K, Weinstock A, Budhu A, Tang W, Wang XWei, Ambs S, Ruppin E. 2016. A joint analysis of transcriptomic and metabolomic data uncovers enhanced enzyme-metabolite coupling in breast cancer.. Sci Rep. 6:29662.

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Timp W, Bravo HCorrada, McDonald OG, Goggins M, Umbricht C, Zeiger M, Feinberg AP, Irizarry RA. 2014. Large hypomethylated blocks as a universal defining epigenetic alteration in human solid tumors.. Genome Med. 6(8):61.

Treangen T, Darling AE, Ragan MA, Messeguer X. 2008. Lecture Notes in Computer ScienceBioinformatics Research and ApplicationsGapped Extension for Local Multiple Alignment of Interspersed DNA Repeats. 4983:74-86.

Khan Z, Balch T, Dellaert F. 2004. Lecture Notes in Computer ScienceComputer Vision - ECCV 2004An MCMC-Based Particle Filter for Tracking Multiple Interacting Targets. 3024:279-290.

Khan Z, Balch T, Dellaert F. 2004. Lecture Notes in Computer ScienceComputer Vision - ECCV 2004An MCMC-Based Particle Filter for Tracking Multiple Interacting Targets. 3024:279-290.

Bateman A, Treangen T, Pop M. 2016. Limitations of Current Approaches for Reference-Free, Graph-Based Variant Detection. the 7th ACM International ConferenceProceedings of the 7th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics - BCB '16.

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