Publications

Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, De Tomaso A, Davidson B, Di Gregorio A, Gelpke M, Goodstein DM et al.. 2002. The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins.. Science. 298(5601):2157-67.

Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KLT et al.. 2008. The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).. Nature. 452(7190):991-6.

Nelson KS, Khan Z, Molnár I, Mihály J, Kaschube M, Beitel GJ. 2012. Drosophila Src regulates anisotropic apical surface growth to control epithelial tube size.. Nat Cell Biol. 14(5):518-25.

Fernandes MCecilia, Dillon LAL, Belew ATrey, Bravo HCorrada, Mosser DM, El-Sayed NM. 2016. Dual Transcriptome Profiling of Leishmania-Infected Human Macrophages Reveals Distinct Reprogramming Signatures. mBio. 7(3):e00027-16.

Hochheiser H, Baehrecke EH, Mount SM, Shneiderman B. 2005. Dynamic Querying for Pattern Identification in Microarray and Genomic Data (2003). Institute for Systems Research Technical ReportsInstitute for Systems Research Technical Reports.

Alam M., Sadique A., Bhuiyan N.A, Nair G.B, Siddique A.K, Sack D.A, Ahsan S., Huq A., Sack R.B, Colwell RR et al.. 2006. Effect of transport at ambient temperature on detection and isolation of Vibrio cholerae from environmental samples. Applied and environmental microbiologyApplied and environmental microbiology. 72

Niranjan TS, Adamczyk A, Bravo H, Taub MA, Wheelan SJ, Irizarry R, Wang T. 2011. Effective detection of rare variants in pooled DNA samples using Cross-pool tailcurve analysis. Genome Biology. 12(9):R93.

G. de Magny C, Murtugudde R., Sapiano M.RP, Nizam A., Brown C.W, Busalacchi A.J, Yunus M., Nair G.B, Gil A.I, Lanata C.F et al.. 2008. Environmental signatures associated with cholera epidemics. Proceedings of the National Academy of SciencesProceedings of the National Academy of Sciences. 105

Taviani E, Ceccarelli D, Lazaro N, Bani S, Cappuccinelli P, Colwell RR, Colombo MM. 2008. Environmental Vibrio spp., isolated in Mozambique, contain a polymorphic group of integrative conjugative elements and class 1 integrons. FEMS Microbiology EcologyFEMS Microbiology Ecology. 64

Le Breton Y, Belew AT, Valdes KM, Islam E, Curry P, Tettelin H, Shirtliff ME, El-Sayed NM, McIver KS. 2015. Essential Genes in the Core Genome of the Human Pathogen Streptococcus pyogenes.. Sci Rep. 5:9838.

Bravo HCorrada, Wright S, Eng KH, Keles S, Wahba G. 2009. Estimating Tree-Structured Covariance Matrices via Mixed-Integer Programming. J Mach Learn Res. 5:41-48.

Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al.. 2007. Evolution of genes and genomes on the Drosophila phylogeny.. Nature. 450(7167):203-18.