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Morris A, Paulson JN, Talukder H, Tipton L, Kling H, Cui L, Fitch A, Pop M, Norris KA, Ghedin E. 2016. Longitudinal analysis of the lung microbiota of cynomolgous macaques during long-term SHIV infection. Microbiome. 4320384718719152130282021211818418719223326578105723(158836212108125732558101131110121arXiv:1006.3316)

Morris A, Paulson JN, Talukder H, Tipton L, Kling H, Cui L, Fitch A, Pop M, Norris KA, Ghedin E. 2016. Longitudinal analysis of the lung microbiota of cynomolgous macaques during long-term SHIV infection. Microbiome. 4320384718719152130282021211818418719223326578105723(158836212108125732558101131110121arXiv:1006.3316)

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Todd GJ, Schwartz A, Rapoport F. 1989. Management of an enlarging aortic aneurysm in the presence of radiation induced retroperitoneal fibrosis.. J Cardiovasc Surg (Torino). 30(2):233-5.

Ondov BD, Treangen T, Melsted áll, Mallonee AB, Bergman NH, Koren S, Phillippy AM. 2016. Mash: fast genome and metagenome distance estimation using MinHash. Genome Biology. (1Suppl 19)

Patro R., Ip CYiu, Bista S., Cho S.S, Thirumalai D., Varshney A. 2011. MDMap: A system for data-driven layout and exploration of molecular dynamics simulations. Biological Data Visualization (BioVis), 2011 IEEE Symposium on.

Gill SR, Pop M., DeBoy RT, Eckburg PB, Turnbaugh PJ, Samuel BS, Gordon JI, Relman DA, Fraser-Liggett CM, Nelson KE. 2006. Metagenomic Analysis of the Human Distal Gut Microbiome. ScienceScienceScienceScience. 312

Treangen T, Koren S., Sommer D.D, Liu B., Astrovskaya I, Ondov B., Darling A.E, Phillippy A.M, Pop M.. 2013. MetAMOS: a modular and open source metagenomic assembly and analysis pipeline. Genome BiolGenome Biol. 14

Wang J., Ungar L.H, Tseng H., Hannenhalli S. 2007. MetaProm: a neural network based meta-predictor for alternative human promoter prediction. BMC genomicsBMC Genomics. 8

Darling AE, Treangen T, Messeguer X, Perna NT. 2007. Methods in Molecular BiologyComparative GenomicsAnalyzing Patterns of Microbial Evolution Using the Mauve Genome Alignment System. 396:135-152.

Treangen T, Messeguer X. 2006. M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species. BMC bioinformatics. 7:433.

Lindsay B., Oundo J., Hossain M.A, Antonio M., Tamboura B., Walker A.W, Paulson J.N, Parkhill J., Omore R., Faruque A.S et al.. 2015. Microbiota that affect risk for shigellosis in children in low-income countries. Emerg Infect DisEmerg Infect Dis. 21:242-50.

Field D, Garrity G, Gray T, Morrison N, Selengut J., Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV et al.. 2008. The minimum information about a genome sequence (MIGS) specification. Nature biotechnologyNature biotechnology. 26

Field D, Garrity G, Gray T, Morrison N, Selengut J., Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV et al.. 2008. The minimum information about a genome sequence (MIGS) specification. Nature biotechnologyNature biotechnology. 26

Field D, Garrity G, Gray T, Morrison N, Selengut J., Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV et al.. 2008. The minimum information about a genome sequence (MIGS) specification. Nature biotechnologyNature biotechnology. 26

Field D, Garrity G, Gray T, Morrison N, Selengut J., Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV et al.. 2008. The minimum information about a genome sequence (MIGS) specification. Nature biotechnologyNature biotechnology. 26

Field D, Garrity G, Gray T, Morrison N, Selengut J., Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV et al.. 2008. The minimum information about a genome sequence (MIGS) specification. Nature biotechnologyNature biotechnology. 26

Field D, Garrity G, Gray T, Morrison N, Selengut J., Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV et al.. 2008. The minimum information about a genome sequence (MIGS) specification. Nature biotechnologyNature biotechnology. 26

Rivas A, Boahene KD, Bravo HCorrada, Tan M, Tamargo RJ, Francis HW. 2011. A Model for Early Prediction of Facial Nerve Recovery After Vestibular Schwannoma Surgery. Otology & Neurotology. 32(5):826-833.

Rivas A, Boahene KD, Bravo HCorrada, Tan M, Tamargo RJ, Francis HW. 2011. A Model for Early Prediction of Facial Nerve Recovery After Vestibular Schwannoma Surgery. Otology & Neurotology. 32(5):826-833.

Marbach-Ad G, McAdams KC, Benson S, Briken V, Cathcart L, Chase M, El-Sayed NM, Frauwirth K, Fredericksen B, Joseph SW et al.. 2010. A model for using a concept inventory as a tool for students' assessment and faculty professional development.. CBE Life Sci Educ. 9(4):408-16.

Sankaranarayanan A.C, Patro R., Turaga P., Varshney A, Chellappa R. 2009. Modeling and visualization of human activities for multicamera networks. EURASIP Journal on Image and Video ProcessingEURASIP Journal on Image and Video Processing. 2009

Kohlsdorf T., Cummings MP, Lynch V.J, Stopper G.F, Takahashi K., Wagner G.P. 2008. A molecular footprint of limb loss: sequence variation of the autopodial identity gene Hoxa-13. J Mol EvolJ Mol Evol. 67

Ronquist F., Teslenko M., van der Mark P., Ayres D.L, Darling A., Hohna S., Larget B., Liu L., Suchard M.A, Huelsenbeck J.P. 2012. MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space. Systematic Biology. 61:539-542.

Li J, Nina B, Lan C, Mary C, Hannenhalli S, Xiaohong Z, P. Thomas C, Parmacek MS. 2012. Myocardin-like Protein (MKL)-2 Regulates TGF-beta Signaling. Embryonic Stem Cells and the Developing Vasculature DevelopmentEmbryonic Stem Cells and the Developing Vasculature Development.

N

Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Buillard V, Cerutti L, Copley R et al.. 2007. New developments in the InterPro database.. Nucleic Acids Res. 35(Database issue):D224-8.

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