Publications

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Regier JC, Mitter C, KRISTENSEN NIELSP, Davis DR, VAN NIEUKERKEN ERIKJ, ROTA JADRANKA, Simonsen TJ, Mitter KT, Kawahara AY, Yen S-H et al..  2015.  A molecular phylogeny for the oldest (nonditrysian) lineages of extant Lepidoptera, with implications for classification, comparative morphology and life-history evolution. Systematic Entomology. :n/a-n/a.
Regier JC, Brown JW, Mitter C, Baixeras J, Cho S, Cummings MP, Zwick A.  2012.  A molecular phylogeny for the leaf-roller moths (Lepidoptera: Tortricidae) and its implications for classification and life history evolution.. PloS one. 7:e35574.
Regier JC, Brown JW, Mitter C, Baixeras J, Cho S, Cummings MP, Zwick A.  2012.  A molecular phylogeny for the leaf-roller moths (Lepidoptera: Tortricidae) and its implications for classification and life history evolution.. PloS one. 7:e35574.
Regier JC, Mitter C, Davis DR, HARRISON TERRYL, Sohn J-C, Cummings MP, Zwick A, Mitter KT.  2014.  A molecular phylogeny and revised classification for the oldest ditrysian moth lineages (Lepidoptera: Tineoidea), with implications for ancestral feeding habits of the mega-diverse Ditrysia. Systematic Entomology. 40:409-432.
Kohlsdorf T., Cummings MP, Lynch V.J, Stopper G.F, Takahashi K., Wagner G.P.  2008.  A molecular footprint of limb loss: sequence variation of the autopodial identity gene Hoxa-13. J Mol EvolJ Mol Evol. 67
Baida RCP, Santos MRM, Carmo MS, Yoshida N, Ferreira D, Ferreira ATeixeira, Sayed NMEl, Andersson B, da Silveira JFranco.  2006.  Molecular Characterization of Serine-, Alanine-, and Proline-Rich Proteins of Trypanosoma cruzi and Their Possible Role in Host Cell Infection. Infect. Immun.Infect. Immun.. 74
Yizhak K., Chaneton B., Gottlieb E., Ruppin E..  2015.  Modeling cancer metabolism on a genome scale. Molecular Systems Biology. 11(6):817-817.
Sankaranarayanan A.C, Patro R., Turaga P., Varshney A, Chellappa R.  2009.  Modeling and visualization of human activities for multicamera networks. EURASIP Journal on Image and Video ProcessingEURASIP Journal on Image and Video Processing. 2009
Marbach-Ad G, McAdams KC, Benson S, Briken V, Cathcart L, Chase M, El-Sayed NM, Frauwirth K, Fredericksen B, Joseph SW et al..  2010.  A model for using a concept inventory as a tool for students' assessment and faculty professional development.. CBE Life Sci Educ. 9(4):408-16.
Marbach-Ad G, McAdams KC, Benson S, Briken V, Cathcart L, Chase M, El-Sayed NM, Frauwirth K, Fredericksen B, Joseph SW et al..  2010.  A model for using a concept inventory as a tool for students' assessment and faculty professional development.. CBE Life Sci Educ. 9(4):408-16.
Field D, Garrity G, Gray T, Morrison N, Selengut J., Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV et al..  2008.  The minimum information about a genome sequence (MIGS) specification. Nature biotechnologyNature biotechnology. 26
Field D, Garrity G, Gray T, Morrison N, Selengut J., Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV et al..  2008.  The minimum information about a genome sequence (MIGS) specification. Nature biotechnologyNature biotechnology. 26
Aryee MJ, Jaffe AE, Corrada-Bravo H, Ladd-Acosta C, Feinberg AP, Hansen KD, Irizarry RA.  2014.  Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.. Bioinformatics. 30(10):1363-9.
Bowler C, Karl DM, Colwell RR.  2009.  Microbial oceanography in a sea of opportunity. NatureNature. 459
Colwell RR.  2006.  Microbial diversity in the era of genomics. SYMPOSIA-SOCIETY FOR GENERAL MICROBIOLOGY. 66
Waisberg M, Lobo F, Cerqueira G, Passos L, Carvalho O, Franco G, El‐Sayed NM.  2007.  Microarray analysis of gene expression induced by sexual contact in Schistosoma mansoni. BMC GenomicsBMC Genomics. 8
Waisberg M, Lobo F, Cerqueira G, Passos L, Carvalho O, Franco G, El‐Sayed NM.  2007.  Microarray analysis of gene expression induced by sexual contact in Schistosoma mansoni. BMC GenomicsBMC Genomics. 8
Rivera ING, Lipp EK, Gil A, Choopun N, Huq A, Colwell RR.  2003.  Method of DNA extraction and application of multiplex polymerase chain reaction to detect toxigenic Vibrio cholerae O1 and O139 from aquatic ecosystems. Environmental MicrobiologyEnvironmental Microbiology. 5
Rivera ING, Lipp EK, Gil A, Choopun N, Huq A, Colwell RR.  2003.  Method of DNA extraction and application of multiplex polymerase chain reaction to detect toxigenic Vibrio cholerae O1 and O139 from aquatic ecosystems. Environmental MicrobiologyEnvironmental Microbiology. 5
Ghurye JS, Cepeda-Espinoza V, Pop M.  2016.  Metagenomic Assembly: Overview, Challenges and Applications. Yale J Biol Med. 89(3)
Hasan NA, W. Chowdhury B, Rahim N, Sultana M, S. Shabnam A, Mai V, Ali A, Morris GJ, R. Sack B, Huq A et al..  2011.  Metagenomic 16S rDNA Targeted PCR-DGGE in Determining Bacterial Diversity in Aquatic Ecosystem. Bangladesh Journal of MicrobiologyBangladesh Journal of Microbiology. 27
Hasan NA, W. Chowdhury B, Rahim N, Sultana M, S. Shabnam A, Mai V, Ali A, Morris GJ, R. Sack B, Huq A et al..  2011.  Metagenomic 16S rDNA Targeted PCR-DGGE in Determining Bacterial Diversity in Aquatic Ecosystem. Bangladesh Journal of MicrobiologyBangladesh Journal of Microbiology. 27
Hasan NA, W. Chowdhury B, Rahim N, Sultana M, S. Shabnam A, Mai V, Ali A, Morris GJ, R. Sack B, Huq A et al..  2011.  Metagenomic 16S rDNA Targeted PCR-DGGE in Determining Bacterial Diversity in Aquatic Ecosystem. Bangladesh Journal of MicrobiologyBangladesh Journal of Microbiology. 27
Bringaud F, Müller M, Cerqueira GCoutinho, Smith M, Rochette A, el-Sayed NMA, Papadopoulou B, Ghedin E.  2007.  Members of a large retroposon family are determinants of post-transcriptional gene expression in Leishmania.. PLoS Pathog. 3(9):1291-307.
Bloom JS, Khan Z, Kruglyak L, Singh M, Caudy AA.  2009.  Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays.. BMC Genomics. 10:221.

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