Publications

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2008
Bazinet AL, Cummings MP.  2008.  The Lattice Project: a Grid research and production environment combining multiple Grid computing models. Distributed & Grid Computing — Science Made Transparent for Everyone. Principles, Applications and Supporting CommunitiesDistributed & Grid Computing — Science Made Transparent for Everyone. Principles, Applications and Supporting Communities.
Colwell RR.  2008.  The marine environment and human health: the cholera model. Global Climate Change and Extreme Weather Events: Understanding the Contributions to Infectious Disease EmergenceGlobal Climate Change and Extreme Weather Events: Understanding the Contributions to Infectious Disease Emergence.
Wan L.B, Pan H., Hannenhalli S, Cheng Y., Ma J., Fedoriw A., Lobanenkov V., Latham K.E, Schultz R.M, Bartolomei M.S.  2008.  Maternal depletion of CTCF reveals multiple functions during oocyte and preimplantation embryo development. DevelopmentDevelopment. 135
Field D, Garrity G, Gray T, Morrison N, Selengut J., Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV et al..  2008.  The minimum information about a genome sequence (MIGS) specification. Nature biotechnologyNature biotechnology. 26
Field D, Garrity G, Gray T, Morrison N, Selengut J., Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV et al..  2008.  The minimum information about a genome sequence (MIGS) specification. Nature biotechnologyNature biotechnology. 26
Kohlsdorf T., Cummings MP, Lynch V.J, Stopper G.F, Takahashi K., Wagner G.P.  2008.  A molecular footprint of limb loss: sequence variation of the autopodial identity gene Hoxa-13. J Mol EvolJ Mol Evol. 67
Khondker M, Bhuiyan RAhmed, Yeasmin J, Alam M, R. Sack B, Huq A, Colwell RR.  2008.  New records of phytoplankton for Bangladesh. 2. Cryptophyceae and Synurophyceae. Bangladesh Journal of BotanyBangladesh Journal of Botany. 36
Khondker M, Bhuiyan RAhmed, Yeasmin J, Alam M, R. Sack B, Huq A, Colwell RR.  2008.  New records of phytoplankton for Bangladesh. 5. Euglena, Euglenocapsa. Bangladesh Journal of Plant TaxonomyBangladesh Journal of Plant Taxonomy. 15
Khondker M, Bhuiyan RAhmed, Yeasmin J, Alam M, R. Sack B, Huq A, Colwell RR.  2008.  New records of phytoplankton for Bangladesh. 7. Phacus spp. Bangladesh Journal of BotanyBangladesh Journal of Botany. 37
Khondker M, Bhuiyan RAhmed, Yeasmin J, Alam M, R. Sack B, Huq A, Colwell RR.  2008.  New records of phytoplankton for Bangladesh. 8. Trachelomonas Ehr. (Euglenophyceae). Bangladesh Journal of BotanyBangladesh Journal of Botany. 37
Grim CJ, Taviani E, Alam M, Huq A, R. Sack B, Colwell RR.  2008.  Occurrence and Expression of Luminescence in Vibrio Cholerae. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 74
Regier J.C, Shultz J.W, Ganley A.RD, Hussey A., Shi D., Ball B., Zwick A., Stajich J.E, Cummings MP, Martin J.W et al..  2008.  Resolving arthropod phylogeny: exploring phylogenetic signal within 41 kb of protein-coding nuclear gene sequence. Syst BiolSyst Biol. 57
Regier J.C, Shultz J.W, Ganley A.RD, Hussey A., Shi D., Ball B., Zwick A., Stajich J.E, Cummings MP, Martin J.W et al..  2008.  Resolving arthropod phylogeny: exploring phylogenetic signal within 41 kb of protein-coding nuclear gene sequence. Syst BiolSyst Biol. 57
Waisberg M, Lobo FP, Cerqueira GC, Passos LKJ, Carvalho OS, El-Sayed NM, Franco GR.  2008.  Schistosoma mansoni: Microarray analysis of gene expression induced by host sex.. Exp Parasitol. 120(4):357-63.
Waisberg M, Lobo FP, Cerqueira GC, Passos LKJ, Carvalho OS, El-Sayed NM, Franco GR.  2008.  Schistosoma mansoni: Microarray analysis of gene expression induced by host sex.. Exp Parasitol. 120(4):357-63.
O. Stine C, Alam M, Tang L, G. Nair B, A. Siddique K, Faruque SM, Huq A, Colwell RR, R. Sack B, J. Morris G.  2008.  Seasonal Cholera from Multiple Small Outbreaks, Rural Bangladesh. Emerging Infectious DiseasesEmerg Infect DisEmerging Infectious DiseasesEmerg Infect Dis. 14
Cerqueira GC, Bartholomeu DC, DaRocha WD, Hou L, Freitas-Silva DM, Machado CRenato, El‐Sayed NM, Teixeira SMR.  2008.  Sequence diversity and evolution of multigene families in Trypanosoma cruzi. Molecular and Biochemical ParasitologyMolecular and Biochemical Parasitology. 157
Colwell RR.  2008.  Silent Sputnik. BioScienceBioScience. 58
Zo Y-G, Colwell RR.  2008.  A simple binomial test for estimating sequencing errors in public repository 16S rRNA sequences. Journal of Microbiological MethodsJournal of Microbiological Methods. 72
Snellman E.A, Colwell RR.  2008.  Transesterification activity of a novel lipase from Acinetobacter venetianus RAG-1. Antonie van LeeuwenhoekAntonie van Leeuwenhoek. 94
Mohapatra H, Mohapatra SS, Mantri CK, Colwell RR, Singh DV.  2008.  Vibrio cholerae non‐O1, non‐O139 strains isolated before 1992 from Varanasi, India are multiple drug resistant, contain intSXT, dfr18 and aadA5 genes. Environmental MicrobiologyEnvironmental Microbiology. 10
2007
Rawlings TK, Ruiz GM, Colwell RR.  2007.  Association of Vibrio Cholerae O1 El Tor and O139 Bengal with the Copepods Acartia Tonsa and Eurytemora Affinis. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 73
Grand J, Cummings MP, Rebelo TG, Ricketts TH, Neel MC.  2007.  Biased data reduce efficiency and effectiveness of conservation reserve networks. Ecology LettersEcology Letters. 10
Lee S., Wang T.D, Hashmi N., Cummings MP.  2007.  Bio-STEER: A Semantic Web workflow tool for Grid computing in the life sciences. Future Generation Comp SystFuture Generation Comp Syst. 23
Shneiderman B, Colwell RR, Diamond S, Greenhalgh P, Wulf W.  2007.  Bridging art and science with creativity support tools. Proceedings of the 6th ACM SIGCHI conference on Creativity & cognition.

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