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Reports
Wagner J, Paulson JN, Wang X-S, Bhattacharjee B, Bravo HCorrada.  2015.  Privacy-Preserving Microbiome Analysis Using Secure Computation.
Wagner J, Paulson JN, Wang X-S, Bhattacharjee B, Bravo HCorrada.  2015.  Privacy-Preserving Microbiome Analysis Using Secure Computation.
Sharmin M, Bravo HCorrada, Hannenhalli SS.  2015.  Heterogeneity of Transcription Factor binding specificity models within and across cell lines.
Bravo HCorrada, Eng K.H, Keles S., Wahba G., Wright S..  2008.  Estimating Tree-Structured Covariance Matrices via Mixed-Integer Programming with an Application to Phylogenetic Analysis of Gene Expression. 1142
Journal Articles
Vishnoi A, Kryazhimskiy S, Bazykin GA, Hannenhalli S, Plotkin JB.  2010.  Young Proteins Experience More Variable Selection Pressures Than Old Proteins. Genome ResearchGenome Res.Genome ResearchGenome Res.. 20
Joardar V, Lindeberg M, Jackson RW, Selengut J., Dodson R, Brinkac LM, Daugherty SC, Deboy R, A. Durkin S, Giglio MGwinn et al..  2005.  Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition. Journal of bacteriologyJournal of bacteriology. 187
Joardar V, Lindeberg M, Jackson RW, Selengut J., Dodson R, Brinkac LM, Daugherty SC, Deboy R, A. Durkin S, Giglio MGwinn et al..  2005.  Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition. Journal of bacteriologyJournal of bacteriology. 187
Nelson KE, Fouts DE, Mongodin EF, Ravel J, DeBoy RT, Kolonay JF, Rasko DA, Angiuoli SV, Gill SR, Paulsen IT et al..  2004.  Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species. Nucleic acids researchNucleic Acids Research. 32
Nelson KE, Fouts DE, Mongodin EF, Ravel J, DeBoy RT, Kolonay JF, Rasko DA, Angiuoli SV, Gill SR, Paulsen IT et al..  2004.  Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species. Nucleic acids researchNucleic Acids Research. 32
Nelson KE, Fouts DE, Mongodin EF, Ravel J, DeBoy RT, Kolonay JF, Rasko DA, Angiuoli SV, Gill SR, Paulsen IT et al..  2004.  Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species. Nucleic acids researchNucleic Acids Research. 32
Barry JD, Marcello L, Morrison LJ, Read AF, Lythgoe K, Jones N, Carrington M, Blandin G, Böhme U, Caler E et al..  2005.  What the genome sequence is revealing about trypanosome antigenic variation.. Biochem Soc Trans. 33(Pt 5):986-9.
Barry JD, Marcello L, Morrison LJ, Read AF, Lythgoe K, Jones N, Carrington M, Blandin G, Böhme U, Caler E et al..  2005.  What the genome sequence is revealing about trypanosome antigenic variation.. Biochem Soc Trans. 33(Pt 5):986-9.
Barry JD, Marcello L, Morrison LJ, Read AF, Lythgoe K, Jones N, Carrington M, Blandin G, Böhme U, Caler E et al..  2005.  What the genome sequence is revealing about trypanosome antigenic variation.. Biochem Soc Trans. 33(Pt 5):986-9.
Barry JD, Marcello L, Morrison LJ, Read AF, Lythgoe K, Jones N, Carrington M, Blandin G, Böhme U, Caler E et al..  2005.  What the genome sequence is revealing about trypanosome antigenic variation.. Biochem Soc Trans. 33(Pt 5):986-9.
Alam M, M. Islam T, Rashed SManzur, Johura F-T, Bhuiyan NA, Delgado G, Morales R, Mendez JLuis, Navarro A, Watanabe H et al..  2012.  Vibrio Cholerae Classical Biotype Strains Reveal Distinct Signatures in Mexico. Journal of Clinical MicrobiologyJ. Clin. Microbiol.Journal of Clinical MicrobiologyJ. Clin. Microbiol..
Binsztein N, Costagliola MC, Pichel M, Jurquiza V, Ramírez FC, Akselman R, Vacchino M, Huq A, Colwell RR.  2004.  Viable but Nonculturable Vibrio Cholerae O1 in the Aquatic Environment of Argentina. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 70
Minkah N, Hwang Y, Perry K, Van Duyne GD, Hendrickson R, Lefkowitz EJ, Hannenhalli S, Bushman FD.  2007.  Variola virus topoisomerase: DNA cleavage specificity and distribution of sites in Poxvirus genomes. VirologyVirology. 365
Brill E., Pop M..  1995.  Unsupervised learning of disambiguation rules for part of speech tagging. Proceedings of the third workshop on very large corporaProceedings of the third workshop on very large corpora. 30
Bartholomeu DC, Silva RA, Galvão LMC, el-Sayed NMA, Donelson JE, Teixeira SMR.  2002.  Trypanosoma cruzi: RNA structure and post-transcriptional control of tubulin gene expression.. Exp Parasitol. 102(3-4):123-33.
Bartholomeu DC, Silva RA, Galvão LMC, El‐Sayed NM, Donelson JE, Teixeira SMR.  2002.  Trypanosoma cruzi: RNA structure and post-transcriptional control of tubulin gene expression. Experimental ParasitologyExperimental Parasitology. 102
Bringaud F., Bartholomeu D.C, Blandin G., Delcher A., Baltz T., El‐Sayed NM, Ghedin E..  2006.  The Trypanosoma cruzi L1Tc and NARTc non-LTR retrotransposons show relative site specificity for insertion. Molecular biology and evolutionMolecular biology and evolution. 23
Bringaud F, Bartholomeu DC, Blandin G, Delcher A, Baltz T, el-Sayed NMA, Ghedin E.  2006.  The Trypanosoma cruzi L1Tc and NARTc non-LTR retrotransposons show relative site specificity for insertion.. Mol Biol Evol. 23(2):411-20.
Bringaud F, Bartholomeu DC, Blandin G, Delcher A, Baltz T, el-Sayed NMA, Ghedin E.  2006.  The Trypanosoma cruzi L1Tc and NARTc non-LTR retrotransposons show relative site specificity for insertion.. Mol Biol Evol. 23(2):411-20.
Bringaud F., Bartholomeu D.C, Blandin G., Delcher A., Baltz T., El‐Sayed NM, Ghedin E..  2006.  The Trypanosoma cruzi L1Tc and NARTc non-LTR retrotransposons show relative site specificity for insertion. Molecular biology and evolutionMolecular biology and evolution. 23
Bringaud F., Bartholomeu D.C, Blandin G., Delcher A., Baltz T., El‐Sayed NM, Ghedin E..  2006.  The Trypanosoma cruzi L1Tc and NARTc non-LTR retrotransposons show relative site specificity for insertion. Molecular biology and evolutionMolecular biology and evolution. 23

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