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Hochheiser H, Baehrecke EH, Mount SM, Shneiderman B.  2005.  Dynamic Querying for Pattern Identification in Microarray and Genomic Data (2003). Institute for Systems Research Technical ReportsInstitute for Systems Research Technical Reports.
Fernandes MCecilia, Dillon LAL, Belew ATrey, Bravo HCorrada, Mosser DM, El-Sayed NM.  2016.  Dual Transcriptome Profiling of Leishmania-Infected Human Macrophages Reveals Distinct Reprogramming Signatures. mBio. 7(3):e00027-16.
Vezzulli L, Guzmán CA, Colwell RR, Pruzzo C.  2008.  Dual role colonization factors connecting Vibrio cholerae's lifestyles in human and aquatic environments open new perspectives for combating infectious diseases. Current Opinion in BiotechnologyCurrent Opinion in Biotechnology. 19
Wagner A, Cohen N, Kelder T, Amit U, Liebman E, Steinberg DM, Radonjic M, Ruppin E.  2015.  Drugs that reverse disease transcriptomic signatures are more effective in a mouse model of dyslipidemia.. Mol Syst Biol. 11(3):791.
Salz HK, S Y Mancebo R, Nagengast AA, Speck O, Psotka M, Mount SM.  2004.  The Drosophila U1-70K protein is required for viability, but its arginine-rich domain is dispensable.. Genetics. 168(4):2059-65.
Nelson KS, Khan Z, Molnár I, Mihály J, Kaschube M, Beitel GJ.  2012.  Drosophila Src regulates anisotropic apical surface growth to control epithelial tube size.. Nat Cell Biol. 14(5):518-25.
Lo PC, Mount SM.  1990.  Drosophila melanogaster genes for U1 snRNA variants and their expression during development.. Nucleic Acids Res. 18(23):6971-9.
Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KLT et al..  2008.  The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).. Nature. 452(7190):991-6.
Ghedin E., Wang S., Spiro D., Caler E., Zhao Q., Crabtree J., Allen J.E, Delcher A.L, Guiliano D.B, Miranda-Saavedra D. et al..  2007.  Draft genome of the filarial nematode parasite Brugia malayi. ScienceScience. 317
Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, De Tomaso A, Davidson B, Di Gregorio A, Gelpke M, Goodstein DM et al..  2002.  The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins.. Science. 298(5601):2157-67.
Kirkness E.F, Bafna V., Halpern A.L, Levy S., Remington K., Rusch D.B, Delcher A.L, Pop M., Wang W., Fraser C.M et al..  2003.  The dog genome: survey sequencing and comparative analysis. ScienceScience. 301
Ghodsi M, Liu B, Pop M..  2011.  DNACLUST: accurate and efficient clustering of phylogenetic marker genes. BMC BioinformaticsBMC Bioinformatics. 12
Marks J.C, Cummings MP.  1996.  DNA sequence variation in the ribosomal internal transcribed spacer region of freshwater ıt Cladophora species (Chlorophyta). J PhycolJ Phycol. 32
Davison M, Treangen T, Koren S, Pop M, Bhaya D.  2016.  Diversity in a Polymicrobial Community Revealed by Analysis of Viromes, Endolysins and CRISPR Spacers.. PLoS One. 11(9):e0160574.
Zo Y-G, Chokesajjawatee N, Grim C, Arakawa E, Watanabe H, Colwell RR.  2009.  Diversity and Seasonality of Bioluminescent Vibrio Cholerae Populations in Chesapeake Bay. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 75
Purdy AE, Balch D, Lizárraga‐Partida MLeonardo, Islam MSirajul, Martinez‐Urtaza J, Huq A, Colwell RR, Bartlett DH.  2010.  Diversity and distribution of cholix toxin, a novel ADP‐ribosylating factor from Vibrio cholerae. Environmental Microbiology ReportsEnvironmental Microbiology Reports. 2
Rabinovich S, Adler L, Yizhak K, Sarver A, Silberman A, Agron S, Stettner N, Sun Q, Brandis A, Helbling D et al..  2015.  Diversion of aspartate in ASS1-deficient tumours fosters de novo pyrimidine synthesis. Nature. 527(7578):379-383.
Welch DBMark, Cummings MP, Hillis DM, Meselson M.  2004.  Divergent Gene Copies in the Asexual Class Bdelloidea (Rotifera) Separated Before the Bdelloid Radiation or Within Bdelloid Families. Proceedings of the National Academy of Sciences of the United States of AmericaPNASProceedings of the National Academy of Sciences of the United States of AmericaPNAS. 101
Wang Y-C, Khan Z, Wieschaus EF.  2013.  Distinct Rap1 activity states control the extent of epithelial invagination via α-catenin.. Dev Cell. 25(3):299-309.
Sharmin M, Bravo éctorCorrada, Hannenhalli S.  2016.  Distinct genomic and epigenomic features demarcate hypomethylated blocks in colon cancer. BMC Cancer. 16447943582141728452710921541113181321912(17143623521101753416231113)
Taviani E, Grim CJ, Choi J, Jongsik C, Haley B, Hasan NA, Huq A, Colwell RR.  2010.  Discovery of novel Vibrio cholerae VSP‐II genomic islands using comparative genomic analysis. FEMS Microbiology LettersFEMS Microbiology Letters. 308
Korpal M, Ell BJ, Buffa FM, Ibrahim T, Blanco MA, Celià-Terrassa T, Mercatali L, Khan Z, Goodarzi H, Hua Y et al..  2011.  Direct targeting of Sec23a by miR-200s influences cancer cell secretome and promotes metastatic colonization.. Nat Med. 17(9):1101-8.
Lipp EK, Rivera ING, Gil AI, Espeland EM, Choopun N, Louis VR, Russek-Cohen E, Huq A, Colwell RR.  2003.  Direct Detection of Vibrio Cholerae and ctxA in Peruvian Coastal Water and Plankton by PCR. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 69
Keeley MB, Wood MA, Isiegas C, Stein J, Hellman K, Hannenhalli S, Abel T.  2006.  Differential Transcriptional Response to Nonassociative and Associative Components of Classical Fear Conditioning in the Amygdala and Hippocampus. Learning & MemoryLearn. Mem.Learning & MemoryLearn. Mem.. 13
Wang Y-C, Khan Z, Kaschube M, Wieschaus EF.  2012.  Differential positioning of adherens junctions is associated with initiation of epithelial folding.. Nature. 484(7394):390-3.

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