|
Shahri HHaidarian, Namata G, Navlakha S, Deshpande A, Roussopoulos N.
2007. A graph-based approach to vehicle tracking in traffic camera video streams. Proceedings of the 4th workshop on Data management for sensor networks: in conjunction with 33rd International Conference on Very Large Data Bases. |
|
Kingsford C, Delcher A.L, Salzberg S.L.
2007. A unified model explaining the offsets of overlapping and near-overlapping prokaryotic genes. Molecular biology and evolutionMolecular biology and evolution. 24 |
|
Giancarlo R., Hannenhalli S.
2007. Algorithms in Bioinformatics: 7th International Workshop, WABI 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings. 4645 |
|
Darling AE, Treangen T, Messeguer X, Perna NT.
2007. Analyzing patterns of microbial evolution using the mauve genome alignment system. Comparative Genomics. :135–152. |
|
Rawlings TK, Ruiz GM, Colwell RR.
2007. Association of Vibrio Cholerae O1 El Tor and O139 Bengal with the Copepods Acartia Tonsa and Eurytemora Affinis. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 73 |
|
Grand J, Cummings MP, Rebelo TG, Ricketts TH, Neel MC.
2007. Biased data reduce efficiency and effectiveness of conservation reserve networks. Ecology LettersEcology Letters. 10 |
|
Lee S., Wang T.D, Hashmi N., Cummings MP.
2007. Bio-STEER: A Semantic Web workflow tool for Grid computing in the life sciences. Future Generation Comp SystFuture Generation Comp Syst. 23 |
|
Shneiderman B, Colwell RR, Diamond S, Greenhalgh P, Wulf W.
2007. Bridging art and science with creativity support tools. Proceedings of the 6th ACM SIGCHI conference on Creativity & cognition. |
|
Hammel M, Sfyroera G, Pyrpassopoulos S, Ricklin D, Ramyar KX, Pop M., Jin Z, Lambris JD, Geisbrecht BV.
2007. Characterization of Ehp, a Secreted Complement Inhibitory Protein from Staphylococcus aureus. Journal of Biological ChemistryJournal of Biological Chemistry. 282 |
|
Djikeng A., Raverdy S., Foster JS, Bartholomeu D., Zhang Y., El‐Sayed NM, Carlow C..
2007. Cofactor-independent phosphoglycerate mutase is an essential gene in procyclic form Trypanosoma brucei. Parasitology researchParasitology research. 100 |
|
Leparc G.G, Mitra R.D, Vardhanabhuti S., Wang J., Hannenhalli S, Smit S., Widmann J., Knight R., Wu S., Zhang Y. et al..
2007. COMPUTATIONAL BIOLOGY. Nucleic acids researchNucleic Acids Research. 35 |
|
Colwell RR, Peeters J..
2007. Creating a nationwide wireless detection sensor network for chemical, biological and radiological threats. Gentag White PaperGentag White Paper. |
|
Ghedin E., Wang S., Spiro D., Caler E., Zhao Q., Crabtree J., Allen J.E, Delcher A.L, Guiliano D.B, Miranda-Saavedra D. et al..
2007. Draft genome of the filarial nematode parasite Brugia malayi. ScienceScience. 317 |
|
Hannenhalli S.
2007. Eukaryotic Transcriptional Regulation: Signals, Interactions, and Modules. Computational Genomics: Current MethodsComputational Genomics: Current Methods. |
|
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al..
2007. Evolution of genes and genomes on the Drosophila phylogeny. NatureNature. 450 |
|
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al..
2007. Evolution of genes and genomes on the Drosophila phylogeny.. Nature. 450(7167):203-18. |
|
Dogan RIslamaj, Getoor L, W. Wilbur J, Mount SM.
2007. Features generated for computational splice-site prediction correspond to functional elements. BMC BioinformaticsBMC Bioinformatics. 8 |
|
Dogan RIslamaj, Getoor L, W Wilbur J, Mount SM.
2007. Features generated for computational splice-site prediction correspond to functional elements.. BMC Bioinformatics. 8:410. |
|
Zhang Y, Rath N, Hannenhalli S, Wang Z, Cappola T, Kimura S, Atochina-Vasserman E, Lu MMin, Beers MF, Morrisey EE.
2007. GATA and Nkx factors synergistically regulate tissue-specific gene expression and development in vivo. DevelopmentDevelopment. 134 |
|
Salzberg SL, Kingsford C, Cattoli G, Spiro DJ, Janies DA, Aly MMehrez, Brown IH, Couacy-Hymann E, De Mia GMario, Dung DHuu et al..
2007. Genome Analysis Linking Recent European and African Influenza (H5N1) Viruses. Emerging Infectious DiseasesEmerg Infect DisEmerging Infectious DiseasesEmerg Infect Dis. 13 |
|
Myers GSA, Parker D, Al-Hasani K, Kennan RM, Seemann T, Ren Q, Badger JH, Selengut J., DeBoy RT, Tettelin H et al..
2007. Genome sequence and identification of candidate vaccine antigens from the animal pathogen Dichelobacter nodosus. Nature biotechnologyNature biotechnology. 25 |
|
Myers GSA, Parker D, Al-Hasani K, Kennan RM, Seemann T, Ren Q, Badger JH, Selengut JD, DeBoy RT, Tettelin H et al..
2007. Genome sequence and identification of candidate vaccine antigens from the animal pathogen Dichelobacter nodosus.. Nat Biotechnol. 25(5):569-75. |
|
Yang S., Wang K., Valladares O., Hannenhalli S, Bucan M.,.
2007. Genome-wide expression profiling and bioinformatics analysis of diurnally regulated genes in the mouse prefrontal cortex. Genome BiolGenome Biol. 8 |
|
Bazinet AL, Myers D.S, Fuetsch J., Cummings MP.
2007. Grid Services Base Library: A high-level, procedural application programming interface for writing Globus-based Grid services. Future Generation Comp SystFuture Generation Comp Syst. 23 |
|
Schatz MC, Phillippy AM, Shneiderman B, Salzberg SL.
2007. Hawkeye: an interactive visual analytics tool for genome assemblies. Genome BiologyGenome Biology. 8 |
|
Schatz MC, Trapnell C, Delcher AL, Varshney A.
2007. High-throughput sequence alignment using Graphics Processing Units. BMC BioinformaticsBMC Bioinformatics. 8 |
|
Samet H, Phillippy A, Sankaranarayanan J.
2007. Knowledge discovery using the sand spatial browser. Proceedings of the 8th annual international conference on Digital government research: bridging disciplines & domains. |
|
Bringaud F, Müller M, Cerqueira GCoutinho, Smith M, Rochette A, el-Sayed NMA, Papadopoulou B, Ghedin E.
2007. Members of a large retroposon family are determinants of post-transcriptional gene expression in Leishmania.. PLoS Pathog. 3(9):1291-307. |
|
Wang J., Ungar L.H, Tseng H., Hannenhalli S.
2007. MetaProm: a neural network based meta-predictor for alternative human promoter prediction. BMC genomicsBMC Genomics. 8 |
|
Darling AE, Treangen T, Messeguer X, Perna NT.
2007. Methods in Molecular BiologyComparative GenomicsAnalyzing Patterns of Microbial Evolution Using the Mauve Genome Alignment System. 396:135-152. |
|
Waisberg M, Lobo F, Cerqueira G, Passos L, Carvalho O, Franco G, El‐Sayed NM.
2007. Microarray analysis of gene expression induced by sexual contact in Schistosoma mansoni. BMC GenomicsBMC Genomics. 8 |
|
Sommer D., Delcher A., Salzberg S., Pop M..
2007. Minimus: a fast, lightweight genome assembler. BMC bioinformaticsBMC Bioinformatics. 8 |
|
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Buillard V, Cerutti L, Copley R et al..
2007. New developments in the InterPro database.. Nucleic Acids Res. 35(Database issue):D224-8. |
|
Khondker M, Bhuiyan RAhmed, Yeasmin J, Alam M, R. Sack B, Huq A, Colwell RR.
2007. New records of phytoplankton for Bangladesh. 3. Volvocales. Bangladesh Journal of Plant TaxonomyBangladesh Journal of Plant Taxonomy. 14 |
|
Khondker M, Bhuiyan RAhmed, Yeasim J, Alam M, R. Sack B, Huq A, Colwell RR.
2007. New records of phytoplankton for Bangladesh. 4. Chlorococcales. Bangladesh Journal of Plant TaxonomyBangladesh Journal of Plant Taxonomy. 14 |
|
Souza RT, Santos MRM, Lima FM, El‐Sayed NM, Myler PJ, Ruiz JC, da Silveira JFranco.
2007. New Trypanosoma cruzi Repeated Element That Shows Site Specificity for Insertion. Eukaryotic CellEukaryotic Cell. 6 |
|
Bravo HCorrada, Ramakrishnan R.
2007. Optimizing mpf queries. Proceedings of the 2007 ACM SIGMOD international conference on Management of data - SIGMOD '07. |
|
Vardhanabhuti S, Wang J, Hannenhalli S.
2007. Position and distance specificity are important determinants of cis-regulatory motifs in addition to evolutionary conservation. Nucleic Acids ResearchNucleic Acids Research. 35 |
|
Coutard F,, Crassous P, Droguet M,, Gobin E, Colwell RR, Pommepuy M, Hervio-Heath D.
2007. Recovery in culture of viable but nonculturable Vibrio parahaemolyticus: regrowth or resuscitation? The ISME JournalThe ISME journal. 1 |
|
Haas BJ, Berriman M, Hirai H, Cerqueira GG, LoVerde PT, El‐Sayed NM.
2007. Schistosoma mansoni genome: Closing in on a final gene set. Experimental ParasitologyExperimental Parasitology. 117 |
|
Mount SM, Gotea V, Lin C-F, Hernandez K, Makalowski W.
2007. Spliceosomal small nuclear RNA genes in 11 insect genomes.. RNA. 13(1):5-14. |
|
Dogan R.I, Getoor L, Wilbur W.J, Mount SM.
2007. SplicePort--An interactive splice-site analysis tool. Nucleic Acids ResearchNucleic Acids Research. 35 |
|
Dogan RIslamaj, Getoor L, W Wilbur J, Mount SM.
2007. SplicePort--an interactive splice-site analysis tool.. Nucleic Acids Res. 35(Web Server issue):W285-91. |
|
Stelter K, El‐Sayed NM, Seeber F.
2007. The Expression of a Plant-type Ferredoxin Redox System provides Molecular Evidence for a Plastid in the Early Dinoflagellate Perkinsus marinus. ProtistProtist. 158 |
|
Selengut J., Haft DH, Davidsen T, Ganapathy A, Gwinn-Giglio M, Nelson WC, R. Richter A, White O.
2007. TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes. Nucleic acids researchNucleic Acids Research. 35 |
|
Singh L.N, Wang L.S, Hannenhalli S.
2007. TREMOR—a tool for retrieving transcriptional modules by incorporating motif covariance. Nucleic acids researchNucleic Acids Research. 35 |
|
Chaiyanan S, Chaiyanan S, Grim C, Maugel T, Huq A, Colwell RR.
2007. Ultrastructure of coccoid viable but non‐culturable Vibrio cholerae. Environmental MicrobiologyEnvironmental Microbiology. 9 |
|
Minkah N, Hwang Y, Perry K, Van Duyne GD, Hendrickson R, Lefkowitz EJ, Hannenhalli S, Bushman FD.
2007. Variola virus topoisomerase: DNA cleavage specificity and distribution of sites in Poxvirus genomes. VirologyVirology. 365 |
|
Alam M., Sultana M., Nair G.B, Siddique A.K, Hasan N.A, Sack R.B, Sack D.A, Ahmed K.U, Sadique A., Watanabe H. et al..
2007. Viable but nonculturable Vibrio cholerae O1 in biofilms in the aquatic environment and their role in cholera transmission. Proceedings of the National Academy of SciencesProceedings of the National Academy of Sciences. 104 |
