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Nelson K.E, Weinel C., Paulsen I.T, Dodson R.J, Hilbert H., Santos V.APMart, Fouts D.E, Gill S.R, Pop M., Holmes M. et al.. 2003. Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440. Environmental MicrobiologyEnvironmental Microbiology. 5

C. Buell R, Joardar V, Lindeberg M, Selengut J., Paulsen IT, Gwinn ML, Dodson RJ, DeBoy RT, A. Durkin S, Kolonay JF et al.. 2003. The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000. Proceedings of the National Academy of Sciences of the United States of AmericaProceedings of the National Academy of Sciences of the United States of America. 100

Goodall S., Reggia JA, Chen Y., Ruppin E., Whitney C.. 1997. A computational model of acute focal cortical lesions. StrokeStroke. 28

Senoh M, Ghosh‐Banerjee J, Ramamurthy T, Hamabata T, Kurakawa T, Takeda M, Colwell RR, G. Nair B, Takeda Y. 2010. Conversion of viable but nonculturable Vibrio cholerae to the culturable state by co‐culture with eukaryotic cells. Microbiology and ImmunologyMicrobiology and Immunology. 54

Plasschaert R.N, Vigneau S., Tempera I., Gupta R., Maksimoska J., Everett L., Davuluri R., Mamorstein R., Lieberman P.M, Schultz D. et al.. 2014. CTCF binding site sequence differences are associated with unique regulatory and functional trends during embryonic stem cell differentiation. Nucleic Acids ResNucleic Acids ResNucleic Acids Res. 42:774-89.

D

Ghodsi M, Hill CM, Astrovskaya I, Lin H, Sommer DD, Koren S, Pop M.. 2013. De novo likelihood-based measures for comparing genome assemblies. BMC research notes. 6

Liu B., Faller L.L, Klitgord N., Mazumdar V., Ghodsi M., Sommer D.D, Gibbons T.R, Treangen T, Chang Y.C, Li S. et al.. 2012. Deep Sequencing of the Oral Microbiome Reveals Signatures of Periodontal Disease. PloS onePLoS One. 7

Liu B., Faller L.L, Klitgord N., Mazumdar V., Ghodsi M., Sommer D.D, Gibbons T.R, Treangen T, Chang Y.C, Li S. et al.. 2012. Deep Sequencing of the Oral Microbiome Reveals Signatures of Periodontal Disease. PloS onePLoS One. 7

Huq A, Grim C, Colwell RR, G. Nair B. 2006. Detection, Isolation, and Identification of Vibrio cholerae from the Environment. Current Protocols in MicrobiologyCurrent Protocols in Microbiology.

Grim CJ, Jaiani E, Whitehouse CA, Janelidze N, Kokashvili T, Tediashvili M, Colwell RR, Huq A. 2009. Detection of toxigenic Vibrio cholerae O1 in freshwater lakes of the former Soviet Republic of Georgia. Environmental Microbiology ReportsEnvironmental Microbiology Reports. 2

Lipp EK, Rivera ING, Gil AI, Espeland EM, Choopun N, Louis VR, Russek-Cohen E, Huq A, Colwell RR. 2003. Direct Detection of Vibrio Cholerae and ctxA in Peruvian Coastal Water and Plankton by PCR. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 69

Korpal M, Ell BJ, Buffa FM, Ibrahim T, Blanco MA, Terrassa Tà-, Mercatali L, Khan Z, Goodarzi H, Hua Y et al.. 2011. Direct targeting of Sec23a by miR-200s influences cancer cell secretome and promotes metastatic colonization. Nature Medicine. 17(9):1101-1108.

Korpal M, Ell BJ, Buffa FM, Ibrahim T, Blanco MA, Terrassa Tà-, Mercatali L, Khan Z, Goodarzi H, Hua Y et al.. 2011. Direct targeting of Sec23a by miR-200s influences cancer cell secretome and promotes metastatic colonization. Nature Medicine. 17(9):1101-1108.

Korpal M, Ell BJ, Buffa FM, Ibrahim T, Blanco MA, Celià-Terrassa T, Mercatali L, Khan Z, Goodarzi H, Hua Y et al.. 2011. Direct targeting of Sec23a by miR-200s influences cancer cell secretome and promotes metastatic colonization.. Nat Med. 17(9):1101-8.

Korpal M, Ell BJ, Buffa FM, Ibrahim T, Blanco MA, Celià-Terrassa T, Mercatali L, Khan Z, Goodarzi H, Hua Y et al.. 2011. Direct targeting of Sec23a by miR-200s influences cancer cell secretome and promotes metastatic colonization.. Nat Med. 17(9):1101-8.

Taviani E, Grim CJ, Choi J, Jongsik C, Haley B, Hasan NA, Huq A, Colwell RR. 2010. Discovery of novel Vibrio cholerae VSP‐II genomic islands using comparative genomic analysis. FEMS Microbiology LettersFEMS Microbiology Letters. 308

Zo Y-G, Chokesajjawatee N, Grim C, Arakawa E, Watanabe H, Colwell RR. 2009. Diversity and Seasonality of Bioluminescent Vibrio Cholerae Populations in Chesapeake Bay. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 75

Ghodsi M, Liu B, Pop M.. 2011. DNACLUST: accurate and efficient clustering of phylogenetic marker genes. BMC BioinformaticsBMC Bioinformatics. 12

Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, De Tomaso A, Davidson B, Di Gregorio A, Gelpke M, Goodstein DM et al.. 2002. The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins.. Science. 298(5601):2157-67.

Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, De Tomaso A, Davidson B, Di Gregorio A, Gelpke M, Goodstein DM et al.. 2002. The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins.. Science. 298(5601):2157-67.

Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, De Tomaso A, Davidson B, Di Gregorio A, Gelpke M, Goodstein DM et al.. 2002. The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins.. Science. 298(5601):2157-67.

Ghedin E., Wang S., Spiro D., Caler E., Zhao Q., Crabtree J., Allen J.E, Delcher A.L, Guiliano D.B, Miranda-Saavedra D. et al.. 2007. Draft genome of the filarial nematode parasite Brugia malayi. ScienceScience. 317

Ghedin E., Wang S., Spiro D., Caler E., Zhao Q., Crabtree J., Allen J.E, Delcher A.L, Guiliano D.B, Miranda-Saavedra D. et al.. 2007. Draft genome of the filarial nematode parasite Brugia malayi. ScienceScience. 317

Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KLT et al.. 2008. The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).. Nature. 452(7190):991-6.

Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KLT et al.. 2008. The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).. Nature. 452(7190):991-6.

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