You are here

Home ›

Publications

Export 68 results:
Author Title [ Type(Asc)] Year
Filters: First Letter Of Title is C  [Clear All Filters]
Journal Articles
Plasschaert R.N, Vigneau S., Tempera I., Gupta R., Maksimoska J., Everett L., Davuluri R., Mamorstein R., Lieberman P.M, Schultz D. et al..  2014.  CTCF binding site sequence differences are associated with unique regulatory and functional trends during embryonic stem cell differentiation. Nucleic Acids ResNucleic Acids ResNucleic Acids Res. 42:774-89.
Essien K, Vigneau S, Apreleva S, Singh LN, Bartolomei MS, Hannenhalli S.  2009.  CTCF binding site classes exhibit distinct evolutionary, genomic, epigenomic and transcriptomic features. Genome BiologyGenome Biology. 10
El‐Sayed NM, Patton C.L, Harkins P.C, Fox R.O, Anderson K..  1995.  Crystallization and preliminary X-ray investigation of the recombinant Trypanosoma brucei rhodesiense calmodulin. Proteins: Structure, Function, and BioinformaticsProteins: Structure, Function, and Bioinformatics. 21
Huq A, R. Sack B, Nizam A, Longini IM, G. Nair B, Ali A, J. Morris G, Khan M.NHuda, A. Siddique K, Yunus M et al..  2005.  Critical Factors Influencing the Occurrence of Vibrio Cholerae in the Environment of Bangladesh. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 71
Colwell RR, Peeters J..  2007.  Creating a nationwide wireless detection sensor network for chemical, biological and radiological threats. Gentag White PaperGentag White Paper.
Zo Y-G, Chokesajjawatee N, Arakawa E, Watanabe H, Huq A, Colwell RR.  2008.  Covariability of Vibrio Cholerae Microdiversity and Environmental Parameters. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 74
Kingsford C, Zaslavsky E, Singh M.  2011.  A cost-aggregating integer linear program for motif finding. Journal of Discrete AlgorithmsJournal of Discrete Algorithms. 9
Ruppin E., Reggia JA.  2001.  Cortical Spreading depression and the pathogenesis of brain disorders: a computational and neural network-based investigation. Neurological researchNeurological research. 23
Singh LN, Hannenhalli S.  2010.  Correlated Changes Between Regulatory Cis Elements and Condition-Specific Expression in Paralogous Gene Families. Nucleic Acids ResearchNucl. Acids Res.Nucleic Acids ResearchNucl. Acids Res.. 38
Cummings MP.  1992.  Copia-like retrotransposons in plants: a brief introduction. The Plant Genetics NewsletterThe Plant Genetics Newsletter. 8
Voytas D.F, Cummings MP, Koniczny A., Ausubel F.M, Rodermel S.R.  1992.  copia-like retrotransposons are ubiquitous among plants. Proc Natl Acad Sci USAProc Natl Acad Sci USA. 89
Senoh M, Ghosh‐Banerjee J, Ramamurthy T, Hamabata T, Kurakawa T, Takeda M, Colwell RR, G. Nair B, Takeda Y.  2010.  Conversion of viable but nonculturable Vibrio cholerae to the culturable state by co‐culture with eukaryotic cells. Microbiology and ImmunologyMicrobiology and Immunology. 54
He X, Chatterjee R, John S, Bravo H, Sathyanarayana BK, Biddie SC, FitzGerald PC, Stamatoyannopoulos JA, Hager GL, Vinson C.  2013.  Contribution of nucleosome binding preferences and co-occurring DNA sequences to transcription factor binding. BMC Genomics. 14(1):428.
Almeida M, Hebert A, Abraham A-L, Rasmussen S, Monnet C, Pons N, Delbes C, Loux V, Batto J-M, Leonard P et al..  2014.  Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products. BMC GenomicsBMC Genomics. 15:1101.
Reggia JA, Ruppin E., Berndt R.S.  1997.  Computer models: A new approach to the investigation of disease. MD ComputingMD Computing. 14
Pertea M, Mount SM, Salzberg SL.  2007.  A computational survey of candidate exonic splicing enhancer motifs in the model plant Arabidopsis thaliana.. BMC Bioinformatics. 8:159.
Yizhak K, Le Dévédec SE, Rogkoti VMaria, Baenke F, de Boer VC, Frezza C, Schulze A, van de Water B, Ruppin E.  2014.  A computational study of the Warburg effect identifies metabolic targets inhibiting cancer migration.. Mol Syst Biol. 10:744.
Ruppin E., Horn D., Levy N., Reggia JA.  1996.  Computational studies of synaptic alterations in Alzheimer’s disease. Neural modeling of brain and cognitive disordersNeural modeling of brain and cognitive disorders.
Kanodia JS, Kim Y, Tomer R, Khan Z, Chung K, Storey JD, Lu H, Keller PJ, Shvartsman SY.  2011.  A computational statistics approach for estimating the spatial range of morphogen gradients.. Development. 138(22):4867-74.
Goodall S., Reggia JA, Chen Y., Ruppin E., Whitney C..  1997.  A computational model of acute focal cortical lesions. StrokeStroke. 28
Mendelowitz L, Pop M.  2014.  Computational methods for optical mapping. GigaScienceGigaScience. 3:33.
Leparc G.G, Mitra R.D, Vardhanabhuti S., Wang J., Hannenhalli S, Smit S., Widmann J., Knight R., Wu S., Zhang Y. et al..  2007.  COMPUTATIONAL BIOLOGY. Nucleic acids researchNucleic Acids Research. 35
Choi J.H, Tang H., Kim S., Pop M..  2010.  Computational Approaches for Genome Assembly Validation. Biological Data MiningBiological Data Mining.
Essien K, Hannenhalli S, Stoeckert CJ.  2008.  Computational Analysis of Constraints on Noncoding Regions, Coding Regions and Gene Expression in Relation to Plasmodium Phenotypic Diversity. PLoS ONEPLoS ONEPLoS ONEPLoS ONE. 3
Campbell MA, Haas BJ, Hamilton JP, Mount SM, C Buell R.  2006.  Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis.. BMC Genomics. 7:327.

Pages

Publications