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Author Title Type [ Year(Desc)]
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1983
Mount SM.  1983.  RNA processing. Sequences that signal where to splice.. Nature. 304(5924):309-10.
1991
Cummings MP.  1991.  Review of Fundamentals of Molecular Evolution, by Li. W.-H. and D. Graur. CladisticsCladistics. 7
1995
Hannenhalli S, Pevzner P.A.  1995.  Reversals do not cut long strips.
1996
Peculis BA, Mount SM.  1996.  Ribosomal RNA: small nucleolar RNAs make their mark.. Curr Biol. 6(11):1413-5.
2001
Segal M.R, Cummings MP, Hubbard A.E.  2001.  Relating amino acid sequence to phenotype: analysis of peptide-binding data. BiometricsBiometrics. 57
2003
Colwell RR, Huq A, M. Islam S, Aziz K.MA, Yunus M., N. Khan H, Mahmud A., R. Sack B, Nair G.B, Chakraborty J. et al..  2003.  Reduction of Cholera in Bangladeshi Villages by Simple Filtration. Proceedings of the National Academy of SciencesPNASProceedings of the National Academy of SciencesPNAS. 100
2004
Khan Z., Balch T., Dellaert F..  2004.  A Rao-Blackwellized particle filter for eigentracking. Proceedings of the 2004 IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2004. CVPR 2004.Proceedings of the 2004 IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2004. CVPR 2004..
Roberts M, Hayes W, Hunt BR, Mount SM, Yorke JA.  2004.  Reducing storage requirements for biological sequence comparison.. Bioinformatics. 20(18):3363-9.
2006
Hinsch H, Hannenhalli S.  2006.  Recurring genomic breaks in independent lineages support genomic fragility. BMC Evolutionary BiologyBMC Evolutionary Biology. 6
Lewinski M.K, Yamashita M., Emerman M., Ciuffi A., Marshall H., Crawford G., Collins F., Shinn P., Leipzig J., Hannenhalli S et al..  2006.  Retroviral DNA integration: viral and cellular determinants of target-site selection. PLoS pathogensPLoS pathogens. 2
2007
Coutard F,, Crassous P, Droguet M,, Gobin E, Colwell RR, Pommepuy M, Hervio-Heath D.  2007.  Recovery in culture of viable but nonculturable Vibrio parahaemolyticus: regrowth or resuscitation? The ISME JournalThe ISME journal. 1
2008
Regier J.C, Shultz J.W, Ganley A.RD, Hussey A., Shi D., Ball B., Zwick A., Stajich J.E, Cummings MP, Martin J.W et al..  2008.  Resolving arthropod phylogeny: exploring phylogenetic signal within 41 kb of protein-coding nuclear gene sequence. Syst BiolSyst Biol. 57
Bringaud F, Ghedin E, El‐Sayed NM, Papadopoulou B.  2008.  Role of transposable elements in trypanosomatids. Microbes and InfectionMicrobes and Infection. 10
2009
Qasim AN, Metkus TS, Tadesse M, Lehrke M, Restine S, Wolfe ML, Hannenhalli S, Cappola T, Rader DJ, Reilly MP.  2009.  Resistin gene variation is associated with systemic inflammation but not plasma adipokine levels, metabolic syndrome or coronary atherosclerosis in nondiabetic Caucasians. Clinical EndocrinologyClinical Endocrinology. 70
Navlakha S., Schatz M.C, Kingsford C.  2009.  Revealing biological modules via graph summarization. Journal of Computational BiologyJournal of Computational Biology. 16
Grim CJ, Zo Y-G, Hasan NA, Ali A, Chowdhury WB, Islam A, Rashid MH, Alam M, J. Morris G, Huq A et al..  2009.  RNA Colony Blot Hybridization Method for Enumeration of Culturable Vibrio Cholerae and Vibrio Mimicus Bacteria. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 75
2010
Everett L., Hansen M., Hannenhalli S.  2010.  Regulating the regulators: modulators of transcription factor activity. Methods Mol. BiolMethods Mol. Biol. 674
2011
Tian Y, Zhang Y, Hurd L, Hannenhalli S, Liu F, Lu MMin, Morrisey EE.  2011.  Regulation of Lung Endoderm Progenitor Cell Behavior by miR302/367. DevelopmentDevelopmentDevelopmentDevelopment. 138
Treangen T, Salzberg SL.  2011.  Repetitive DNA and next-generation sequencing: computational challenges and solutions. Nature Reviews Genetics.
Maximo A., Patro R., Varshney A, Farias R..  2011.  A robust and rotationally invariant local surface descriptor with applications to non-local mesh processing. Graphical ModelsGraphical Models. 73
De Magny GConstantin, Mozumder PK, Grim CJ, Hasan NA, M. Naser N, Alam M, R. Sack B, Huq A, Colwell RR.  2011.  Role of Zooplankton Diversity in Vibrio Cholerae Population Dynamics and in the Incidence of Cholera in the Bangladesh Sundarbans. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 77
2012
Nahar S, Sultana M, M. Naser N, Nair GB, Watanabe H, Ohnishi M, Yamamoto S, Endtz H, Cravioto A, R. Sack B et al..  2012.  Role of Shrimp Chitin in the Ecology of Toxigenic Vibrio cholerae and Cholera Transmission. Frontiers in MicrobiologyFront MicrobiolFrontiers in MicrobiologyFront Microbiol. 2
2013
Goodheart J, Valdés Á.  2013.  Re-evaluation of the Doriopsilla areolata Bergh, 1880 (Mollusca: Opisthobranchia) subspecies complex in the eastern Atlantic Ocean and its relationship to South African Doriopsilla miniata (Alder & Hancock, 1864) based on molecular data. Marine Biodiversity. 43(2):113-120.
2014
Parker HS, Bravo HCorrada, Leek JT.  2014.  Removing batch effects for prediction problems with frozen surrogate variable analysis.. PeerJ. 2:e561.
Paulson JN, Bravo éctorCorrada, Pop M.  2014.  Reply to: "A fair comparison". Nature Methods. 11(4):359-360.

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