Publications

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Nelson KS, Khan Z, r Iá, ly ózsefá, Kaschube M, Beitel GJ.  2012.  Drosophila Src regulates anisotropic apical surface growth to control epithelial tube size. Nature Cell Biology. 14(5):518-525.
Venkateswaran K, Checinska-Sielaff A, Klubnik J, Treangen T, Rosovitz M.J., Bergman NH.  2017.  Draft Genome Sequences from a Novel Clade of Bacillus cereus sensu lato Strains Isolated from the International Space Station. Genome Announcements. 1:1.
Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KLT et al..  2008.  The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).. Nature. 452(7190):991-6.
Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KLT et al..  2008.  The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).. Nature. 452(7190):991-6.
Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KLT et al..  2008.  The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).. Nature. 452(7190):991-6.
Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, De Tomaso A, Davidson B, Di Gregorio A, Gelpke M, Goodstein DM et al..  2002.  The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins.. Science. 298(5601):2157-67.
Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, De Tomaso A, Davidson B, Di Gregorio A, Gelpke M, Goodstein DM et al..  2002.  The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins.. Science. 298(5601):2157-67.
Kirkness E.F, Bafna V., Halpern A.L, Levy S., Remington K., Rusch D.B, Delcher A.L, Pop M., Wang W., Fraser C.M et al..  2003.  The dog genome: survey sequencing and comparative analysis. ScienceScience. 301
Davison M, Treangen T, Koren S, Pop M, Bhaya D.  2016.  Diversity in a Polymicrobial Community Revealed by Analysis of Viromes, Endolysins and CRISPR Spacers.. PLoS One. 11(9):e0160574.
Purdy AE, Balch D, Lizárraga‐Partida MLeonardo, Islam MSirajul, Martinez‐Urtaza J, Huq A, Colwell RR, Bartlett DH.  2010.  Diversity and distribution of cholix toxin, a novel ADP‐ribosylating factor from Vibrio cholerae. Environmental Microbiology ReportsEnvironmental Microbiology Reports. 2
Purdy AE, Balch D, Lizárraga‐Partida MLeonardo, Islam MSirajul, Martinez‐Urtaza J, Huq A, Colwell RR, Bartlett DH.  2010.  Diversity and distribution of cholix toxin, a novel ADP‐ribosylating factor from Vibrio cholerae. Environmental Microbiology ReportsEnvironmental Microbiology Reports. 2
Rabinovich S, Adler L, Yizhak K, Sarver A, Silberman A, Agron S, Stettner N, Sun Q, Brandis A, Helbling D et al..  2015.  Diversion of aspartate in ASS1-deficient tumours fosters de novo pyrimidine synthesis. Nature. 527(7578):379-383.
Sharmin M, Bravo éctorCorrada, Hannenhalli S.  2016.  Distinct genomic and epigenomic features demarcate hypomethylated blocks in colon cancer. BMC Cancer. 16447943582141728452710921541113181321912(17143623521101753416231113)
Korpal M, Ell BJ, Buffa FM, Ibrahim T, Blanco MA, Celià-Terrassa T, Mercatali L, Khan Z, Goodarzi H, Hua Y et al..  2011.  Direct targeting of Sec23a by miR-200s influences cancer cell secretome and promotes metastatic colonization.. Nat Med. 17(9):1101-8.
Korpal M, Ell BJ, Buffa FM, Ibrahim T, Blanco MA, Celià-Terrassa T, Mercatali L, Khan Z, Goodarzi H, Hua Y et al..  2011.  Direct targeting of Sec23a by miR-200s influences cancer cell secretome and promotes metastatic colonization.. Nat Med. 17(9):1101-8.
Korpal M, Ell BJ, Buffa FM, Ibrahim T, Blanco MA, Terrassa Tà-, Mercatali L, Khan Z, Goodarzi H, Hua Y et al..  2011.  Direct targeting of Sec23a by miR-200s influences cancer cell secretome and promotes metastatic colonization. Nature Medicine. 17(9):1101-1108.
Korpal M, Ell BJ, Buffa FM, Ibrahim T, Blanco MA, Terrassa Tà-, Mercatali L, Khan Z, Goodarzi H, Hua Y et al..  2011.  Direct targeting of Sec23a by miR-200s influences cancer cell secretome and promotes metastatic colonization. Nature Medicine. 17(9):1101-1108.
Paulson JN, O. Stine C, Bravo HCorrada, Pop M..  2013.  Differential abundance analysis for microbial marker-gene surveys. Nature methods. 10
Pop M, Walker AW, Paulson J, Lindsay B, Antonio M, M Hossain A, Oundo J, Tamboura B, Mai V, Astrovskaya I et al..  2014.  Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition.. Genome Biol. 15(6):R76.
Pop M, Walker AW, Paulson J, Lindsay B, Antonio M, M Hossain A, Oundo J, Tamboura B, Mai V, Astrovskaya I et al..  2014.  Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition.. Genome Biol. 15(6):R76.
Alemu E.Y, Carl J.W, H. Bravo C, Hannenhalli S..  2014.  Determinants of expression variability. Nucleic Acids Research. 42(6):3503-3514.
Searle RF, Sellens MH, Elson J, Jenkinson EJ, Billington WD.  1976.  Detection of alloantigens during preimplantation development and early trophoblast differentiation in the mouse by immunoperoxidase labeling.. J Exp Med. 143(2):348-59.
Boca SM, Bravo HCorrada, Caffo B, Leek JT, Parmigiani G.  2013.  A decision-theory approach to interpretable set analysis for high-dimensional data. BiometricsBiometrics. 69
Boca SM, Bravo HCorrada, Caffo B, Leek JT, Parmigiani G.  2013.  A decision-theory approach to interpretable set analysis for high-dimensional data. BiometricsBiometrics. 69
C
Plasschaert R.N, Vigneau S., Tempera I., Gupta R., Maksimoska J., Everett L., Davuluri R., Mamorstein R., Lieberman P.M, Schultz D. et al..  2014.  CTCF binding site sequence differences are associated with unique regulatory and functional trends during embryonic stem cell differentiation. Nucleic Acids ResNucleic Acids ResNucleic Acids Res. 42:774-89.

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